Jorge Antonio Amador Balderas
@jorgeamador.bsky.social
87 followers 480 following 6 posts
PhD student at the Computer Chemistry Center in FAU Molecular Dynamics Simulations on DNA Repair Systems
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jorgeamador.bsky.social
I'm very happy to be attending #WATOC2025 this year in Oslo! I'll be presenting a poster of my work on DNA-Repair Enzymes on Tuesday! I'm super excited!
jorgeamador.bsky.social
Which leads to some ligands binding differently to the metal, with some of them (like the best inhibitor) binding in a bidentate fashion, which would block the entrance of water to the binding site, leading to inhibition (4/4)
jorgeamador.bsky.social
Also, Tyr or Phe doesn't make a critical difference in binding, as the enzyme prioritizes "filling" the hydrophobic pocket with the aromatic ring above other interactions. This also applies to ligands where Tyr and Phe had a D-configuration, with the Zn binding mode being the biggest difference(3/4)
jorgeamador.bsky.social
Interestingly, there are no critical differences that allow us to distinguish between the binding of the inhibitors and the dipeptide, there is no clear trend where the molecules that are the best inhibitors to bind more or less tightly than the rest of the ligands (2/4)
jorgeamador.bsky.social
Among other things, we analyzed the binding of the slowly hydrolyzed dipeptide Gly-Tyr/Phe; and inhibitors that are similar to the dipeptide (Tyr or Phe at the C-terminus and aminocarbonyl or hydroxyaminocarbonyl at the N-terminus) (1/4)