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Gaurav Sablok - I immediately take accepted submitted job offer

@omicscode.bsky.social

140 followers 670 following 580 posts

I primarily use Rust 🦀 , Python, R, and do, follow and develop Bioinformatics Analysis and Software, Algorithm, Machine Learning | Heterosexual | Read Post and Replies | https://github.com/omicscode | Email: [email protected] or [email protected]

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 15d

I am open to Bioinformatics, Computational Biology and Genomics,and submitting applications for job offers in the European Union 🇪🇺, UK 🇬🇧, USA 🇺🇸, Australia 🇦🇺.
Research Background: www.icloud.com/iclouddrive/...
Research Application with references: www.icloud.com/iclouddrive/...

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 11m

Soon, shall be migrating all the ready code to the Codeberg codeberg.org in addition to the GitHub after joining the new job offer, so that the development version can sync across the Codeberg and Github. Codeberg is much better and very concise and applicative. Just like BlueSky of Twitter.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 45m

@ppgardne.bsky.social Thank you for these position, chance and job offer and i am going to apply for the same. I am applying widely and hence as a part of the job search, will apply to this one also. Thank you so much for bringing this to the attention.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1h

Thats so good. @kylemojo.bsky.social . I wish you a very good success and i am looking excited and forward to work along with you all.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 10h

All ORM should be managed by dotenv in a HPC cluster management. You should never read it from command line. If your data uses follow sharding, which is a faster way of indexing B trees then you should use dotenv.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 10h

Better way cargo add dotenv. Add a .dotenv and then in the mail function call the dotenv() into a static : &str variable thats it. It will read the values from the dot env. All HPC cluster i mange i used this, to avoid the command line injecting as by that the database can be corrupted.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 11h

Path for a Bioinformatician and HPC Core or Specialist or Research Associate: 1. System programming: C++ or RUST 🦀 2. Bioinformatics and Machine Learning: : Python or Julia or R. 3. DevOps: GOlang. Choose according to your role. Avoid language jargon as everything can be done with this

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 11h

In addition, Hiring a bioinformatician should be :1. Have a well maintained Github repository, 2. Have knowledge of either C++ or Rust and Python or R for data analysis. Not just only do bash. Fluent in learning new development. 3. Self motivated 4. Think ahead what is emerging.

Tanya Aneichyk @aneichyk.bsky.social · 4d

Hiring #bioinformaticians before having a #data strategy is like putting a carriage in front of the horse
#biotech #techbio #bioinformatics #drugdevelopment

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 14h

Thank you so much and for me programming language is a programming language and nothing more than that. So what is needed i use and what is not needed, dropped. This is the prime reason and explanation of people who write their codebase themselves. Those who just use others, have no thinking.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 19h

This has parallel implementation and going to implement this and see how fast this. I think you can easily spawn threads and make it happen. codeberg.org/libreda/parg...

pargraph

Parallel graph processing using an operator formulation.

codeberg.org

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 20h

Wrote GOlang for DevOps and server management and now use server management. Rest never took any other language apart from this and it is not needed.

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 20h

I am not a fan of learning programming languages. Used C++ previously for a decade and dropped and started using Python and Rust. My employer told we can use R so started R back otherwise, i was writing only Python and Rust end to end. My use of R is only limited to Bioinformatics.

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 20h

This has a pretty good implementation github.com/pnevyk/rusty... and meanwhile i finished writing myself. 😍. Implemented a graph structure for directed graphs and then uses the Louvian method to cluster the metabolic cluster of high expression for graph machine learning.

GitHub - pnevyk/rusty-graphs: Collection of examples for showcasing various Rust graph data structure libraries.

Collection of examples for showcasing various Rust graph data structure libraries. - pnevyk/rusty-graphs

github.com

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 21h

and others and such as Louvian methods for a new crate for metagenomics, bioinformatics and metabolic network based graph learning.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 21h

The only crate in RUST 🦀 whoch has some good implementation of graph github.com/Qiskit/rustw... and on the top of that i am adding all methods such as AVL tree traverse, directed edge rotation, black-trie inverse,

GitHub - Qiskit/rustworkx: A high performance Python graph library implemented in Rust.

A high performance Python graph library implemented in Rust. - Qiskit/rustworkx

github.com

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 22h

The good part of RustRover like Zed is that it provides support for Python programming languages and i am a full stack on RUST 🦀 software dev, algorithmic, machine learning including web and only now uses Python for 💻 machine learning, so that was a very good combination, so same as Zed.

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 22h

Brilliant words. I totally agree to that in all regards and respect.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 22h

Writing a RUST 🦀 graph and they dont have DFS and BFS implementation in a single crate 😆 so have to write a vertex edge relation with the Louvian maths. Do you happen to know any crate.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 23h

Its good really good. I checked today this morning but since my laptop 💻 is old one do too slow for that and so may be later. Overall very good one and i would be really happy to use both Zed and RustRover for RUST 🦀. So thank you for suggesting that.

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

Areas of expertise: I work on all species from bacteria, plants, fungi, humans and work across RNA-Seq, Single-cell, Phylogenomics, Evolutionary analysis, Metagenomics, Pangenomics analysis from all types of sequencing technologies.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

I enjoy every position such as academics. However, with in academics also I prefer Bioinformatician, Developer, CTO, and lead researcher roles as senior CTO, Senior Computational lead in those areas. I am not interested in freelancing (so please kindly don't contact regarding the same).

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

Writing the machine learning model now after a year, its so good and great. Recalling and reading back all what I previously wrote for other projects in plants, bacterial and microbes and Metagenomics. Last six months only human software development and analysis.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

I am not wrong in suggesting this. See the recent survey Our recently released report, The State of Python 2025, shows that 41% of Python developers use the language specifically for machine learning and for others there are better ways. So the whole community is saying this and not only me.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

Awesome thank you and i look forward to my application outcome. It would be so good and i would be happy with the chance, opportunity, job offer and developing us all together.

Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

This evening I optimize this machine learning model and I implemented additional loss functions, for those who dont know you can read: neptune.ai/blog/keras-l... and using that now my prediction efficiency has increased and the model being written entirely in RUST 🦀 is highly scalable

Keras Loss Functions: Everything You Need to Know

Learn about Keras loss functions: from built-in to custom, loss weights, monitoring techniques, and troubleshooting 'nan' issues.

neptune.ai

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Gaurav Sablok - I immediately take accepted submitted job offer @omicscode.bsky.social · 1d

Here is the entire repost by JetBrains. Hence i was quite right in suggesting the approach to anyone. Hence i follow the same only in academic and research that use Python and R only for data analysis and machine learning. blog.jetbrains.com/pycharm/2025...

Why Is Python So Popular in 2025? | The PyCharm Blog

From powering AI and data science to driving web development and automation, Python continues to dominate in 2025. Discover why in our blog post.

blog.jetbrains.com