LightNews
sugimuralab.bsky.social
SugimuraLab
@sugimuralab.bsky.social
110 followers 110 following 7 posts
Sugimura lab at the Department of Bioinformatics and Systems Biology, Faculty of Science, The University of Tokyo.
Posts Media Videos Starter Packs
Pinned
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Mar 24
Xin received the Excellent Research Award based on her master’s thesis. Congratulations!
M2の厳欣さんが東京大学大学院新領域創成科学研究科メディカル情報生命専攻のExcellent Research Award優秀賞を受賞しました。
cbms.k.u-tokyo.ac.jp/about/award/
1 3
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · May 22
Thank you for visiting us and for the excellent seminar! We really enjoyed the stimulating discussions. @turlierlab.bsky.social
turlierlab.bsky.social
Turlier lab @turlierlab.bsky.social · May 19
Great time with @sugimuralab.bsky.social, Shuji Ishihara and colleagues at Tokyo University 🇯🇵. Thank you for your very kind welcome and great scientific discussions 🙂
1
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Apr 24
New preprint! Using in vivo data of epithelial development, we demonstrate the compatibility of strain rate tensors and the accuracy of kinematic equations. The results cross-validate the modified texture analysis and our hydrodynamic model.
www.biorxiv.org/content/10.1...
In vivo assessment of kinematic relationships for epithelial morphogenesis
Tissue growth and deformation result from the combined effects of various cellular events, including cell shape change, cell rearrangement, cell division, and cell death. Resolving and integrating the...
www.biorxiv.org
2 7
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Mar 24
Link to her first first-author paper, Bayesian Parameter Inference for Epithelial Mechanics: www.sciencedirect.com/science/arti...
Bayesian parameter inference for epithelial mechanics
Cell-based mechanical models, such as the Cell Vertex Model (CVM), have proven useful for studying the mechanical control of epithelial tissue dynamic…
www.sciencedirect.com
2 5
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Mar 24
Xin received the Excellent Research Award based on her master’s thesis. Congratulations!
M2の厳欣さんが東京大学大学院新領域創成科学研究科メディカル情報生命専攻のExcellent Research Award優秀賞を受賞しました。
cbms.k.u-tokyo.ac.jp/about/award/
1 3
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Feb 27
I wanted to say that Bayesian Force Inference is now on Google Colab. The original Python code has been uploaded to GitHub.
2
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Feb 27
Bayesian Force Inference is now on GitHub!
Together with GetVertex, an ImageJ/Fiji plugin for extracting input data from skeletonized images, this enables code-free quantification of forces during epithelial development.
github.com/Sugimuralab/...
GitHub - Sugimuralab/BayesianForceInference_GoogleColab
Contribute to Sugimuralab/BayesianForceInference_GoogleColab development by creating an account on GitHub.
github.com
1 6 11
sugimuralab.bsky.social
SugimuraLab @sugimuralab.bsky.social · Feb 27
Happy to share GetVertex, an ImageJ/Fiji plugin that extracts cell vertex positions and connectivity from skeletonized images.
The output text file can be used as input for Bayesian Force Inference and Image-based Parameter Inference for Epithelial Mechanics.
github.com/Sugimuralab/...
GitHub - Sugimuralab/GetVertexPlugin
Contribute to Sugimuralab/GetVertexPlugin development by creating an account on GitHub.
github.com
2