Guillaume Théroux-Rancourt
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guillaumetr.bsky.social
Guillaume Théroux-Rancourt
@guillaumetr.bsky.social

Plant ecophysiologist | Structure and function | 3D anatomy

Director of indoor farming research @Biopterre 🇨🇦. Formerly @BOKUvienna 🇦🇹 @UCDavisPlant 🇺🇸 @ULaval 🇨🇦

Environmental science 46%
Agriculture 20%
Excited to share our paper with Anna Gardner and @florianabusch.bsky.social in Plant Ecophysiology!🌿

We review challenges in interpreting plant stress responses using gas exchange data, offer solutions to improve accuracy and discuss gaps in our current knowledge.

www.sciltp.com/journals/Pla...
The memory of past water abundance shapes #trees 7 years later

New #AJB research by Alana R. O. Chin, @arthurobuntspecht.bsky.social, Omar Laín, Isabella Østerlund, Marcus Schaub, @guillaumetr.bsky.social, Klara Voggeneder & Janneke Hille Ris Lambers

doi.org/10.1002/ajb2... #botany #Pineaceae
🌲 Trees have long memories! Our study shows Scots pine trees remember past water abundance even 7 years after irrigation stops! bsapubs.onlinelibrary.wiley.com/doi/full/10....
Wishing the Elsevier editors who desk-accepted this all the best for their next career moves.

doi.org/10.1016/j.ij...
Welcome everyone new to bluesky! We're building a great plant phys/ecophys community. Check out @bsa-ecophys.bsky.social and their starter pack.
Leaf day respiration involves multiple carbon sources and depends on previous dark metabolism
Leaf day respiration involves multiple carbon sources and depends on previous dark metabolism
Plant, Cell & Environment is an ecology journal analysing the ways plants respond to their environment including biological, physiological and ecological factors.
onlinelibrary.wiley.com

"What They Forgot to Teach You About R" great ressource even for people with good experience in R and Rstudio

Let's "(re)designing our R lifestyle" :)

rstats.wtf

Thanks 👏 to :

Jennifer Bryan
Jim Hester
Shannon Pileggi (@pipinghotdata.bsky.social)
E. David Aja

🧪🌍 #rstats #ggplot2
Low cost open-source plant imaging platform, developed by fantastic PhD candidate @lisaoskam.bsky.social and including scripts for automated image analysis for leaf properties on our linked GitHub, now out in Plant Physiology
doi.org/10.1093/plph...
A low-cost open-source imaging platform reveals spatiotemporal insight into leaf elongation and movement
A modular and low-cost phenotyping setup with an open-source image analysis pipeline shows the importance of spatial and temporal resolution in understanding di
doi.org
New OA Article: "A self-regulatory cell-wall-sensing module at cell edges controls plant growth" rdcu.be/dAAog

With a News & Views: "On the edge — how plant cells monitor growth" rdcu.be/dAAtQ

Cell edges sense mechanical stresses from neighbouring cells. #PlantScience
Great collaboration between biologists and computer scientists. Need robust 3D nuclear segmentation? In deeper tissue layers with poor nuclear staining? Wide applicability? This and more in our latest paper..

bit.ly/3uG2Brd

#PlantScience #PlantBiology #PlantDevelopment #PlantCellBio #PlantEvoDevo
my first paper of the year (and my first ever single author paper) has been finally published!

Do you work on fossil plants? Do you feel that your phylogenies are too uncertain? Don't fear uncertainty, EMBRACE IT! 🧪🌾🌱
Embracing uncertainty: The way forward in plant fossil phylogenetics
Although molecular phylogenetics remains the most widely used method of inferring the evolutionary history of living groups, the last decade has seen a renewed interest in morphological phylogenetics....
bsapubs.onlinelibrary.wiley.com
New paper out in PC&E! Look here if you're after some guidance on how to gas exchange: onlinelibrary.wiley.com/doi/10.1111/...
What measurements are appropriate for your question and how to best take them? Initiated by Maria Papanatsiou, with @cavycavs.bsky.social and many others
We introduce a mathematical model to connect innovation and obsolescence across diverse systems like economics, biology, and science. Taking the “space of the possible,” we model how it grows from innovation and decays with obsolescence.

www.pnas.org/doi/10.1073/...
Some seedlings use air shafts around their cells to refract light and sense its direction. This discovery helps answer how plants seem to know where light is coming from.
Plants Find Light Using Gaps Between Their Cells | Quanta Magazine
A mutant seedling revealed how plant tissues scatter incoming light, allowing plants to sense its direction and move toward it.
www.quantamagazine.org
🍇🌿Great news! The newly published paper ‘Mechanisms of grapevine resilience to a vascular disease: investigating stem radial growth, xylem development and physiological acclimation’ in @annbot by Ninon Dell' Acqua and co-authors is now #free for a limited time. (1/7) 
👉  botany.fyi/qK2u5y
#AoBpapers
Kraft paper? ✅
Introducing machine learning concepts to biology majors? ✅
Icebreaker activity that isn't too awkward? ✅

Check this out in Vol. 1 of my newsletter! 🧪
Vol. 1 - "Will we do the drawing again this year?"
I teach an introduction to data science for biology majors. The greatest challenge of this class is to help students build up an intuition about the many...
buttondown.email

In Neubau: Cafe Comet for amazing coffee and local feeling. La Spiga for the best pizza I ever had (and I have high standards).

Not to forget - Palmenhaus in Schönbrun Park: classic Victorian greenhouse with a nice plant collection. The parc is nice to see but not essential on a short stay. /end

For a classic Viennese coffee house: Cafe Sperl, close to the Natural History Museum. Less or no line up than the ones in the 1st district and with more locals.

Neubau (7th district): lots of nice streets to stroll and places to eat. I’m biased because I lived there. 2/.

Definitely the Natural History Museum! Been there countless times when we lived in Vienna.

Historic centre: It’s nice but there are closer neighbourhoods where you can get a better feeling of why Vienna is such a great city. 1/.
📣 JOB AD from my awesome colleague Valentin Couvreur

➡ PhD Grant on plant water deficit 🌱 🌳 🏞 in the project "The Plant Water Pump" 😀 #Experimental #Forest #Greenhouse #ERC

🌾🧪

More details over here: lnkd.in/eAHrPFJU
🌿New article in @aobp.bsky.social on the impact of climate change on Asplenium nidus, a common epiphytic fern in tropical and subtropical wet forests. Is epiphyte growth more water- or nutrient-limited?

Full #openaccess
👉 bit.ly/41FVXNQ
From Selfies to Science - Precise 3D Leaf Measurement with iPhone 13 and Its Implications for Plant Development and Transpiration https://www.biorxiv.org/content/10.1101/2023.12.30.573617v1
From Selfies to Science - Precise 3D Leaf Measurement with iPhone 13 and Its Implications for Plant Development and Transpiration https://www.biorxiv.org/content/10.1101/2023.12.30.573617v1
Advanced smartphone technology has unified sophisticated, cost-effective sensors, broadening access
www.biorxiv.org
If you use the background_image() function from ggpubr (rpkgs.datanovia.com/ggpubr/refer...), you can display your ggPlantmap on top of a image. There is a small y-axis offset, but it can do the trick. I will work on implementing this function whenever I have some free time. #ggPlantmap
New paper out today: An "unprecedented" range map of the eastern and western Joshua tree, based on Google Maps satellite imagery for more than SIX HUNDRED THOUSAND quarter-square kilometer grid cells

Blog post rundown: lab.jbyoder.org/2023/12/14/n...

And the paper: doi.org/10.3389/fevo...