Marko Terzin
@markoterzin.bsky.social
PhD-ing with GBR microbes @AIMSatJCU | Quantitative Marine Science | Former @IMBRSea | Sketching in my free time: https://www.instagram.com/markito_dibujando/
Reposted by Marko Terzin
Very excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
The planktonic microbiome of the Great Barrier Reef
Large genome databases have markedly improved our understanding of marine microorganisms. Although these resources have focused on prokaryotes, genomes from many dominant marine lineages, such as Pela...
www.biorxiv.org
May 21, 2025 at 7:34 AM
Very excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Marko Terzin
🚨 New method from our team: NNet developed by Yidi Deng! 🚨
- Aggregate and cluster networks into meta-networks
- Integrate prior knowledge to infer active signalling
-Explore dynamic regulation in contexts like haematopoiesis, tumour microenvironments, and transcription factor activity
- Aggregate and cluster networks into meta-networks
- Integrate prior knowledge to infer active signalling
-Explore dynamic regulation in contexts like haematopoiesis, tumour microenvironments, and transcription factor activity
NeighbourNet: Scalable cell-specific co-expression networks for granular regulatory pattern discovery https://www.biorxiv.org/content/10.1101/2025.03.27.645629v1
April 1, 2025 at 10:37 PM
🚨 New method from our team: NNet developed by Yidi Deng! 🚨
- Aggregate and cluster networks into meta-networks
- Integrate prior knowledge to infer active signalling
-Explore dynamic regulation in contexts like haematopoiesis, tumour microenvironments, and transcription factor activity
- Aggregate and cluster networks into meta-networks
- Integrate prior knowledge to infer active signalling
-Explore dynamic regulation in contexts like haematopoiesis, tumour microenvironments, and transcription factor activity
Reposted by Marko Terzin
Excited to share GenomeFISH: genome-based fluorescence in situ hybridisation for strain-level visualisation of microbial communities.
@sjmcilroy.bsky.social, @benjwoodcroft.bsky.social, @jamesvolmer.bsky.social
doi.org/10.21203/rs....
🧵1/6
@sjmcilroy.bsky.social, @benjwoodcroft.bsky.social, @jamesvolmer.bsky.social
doi.org/10.21203/rs....
🧵1/6
GenomeFISH: genome-based fluorescence in situ hybridisation for strain-level visualisation of microbial communities
Fluorescence in situ hybridisation (FISH) is a powerful tool for visualising the spatial organisation of microbial communities. However, traditional FISH has several limitations, including limited p...
doi.org
December 19, 2024 at 5:17 PM
Excited to share GenomeFISH: genome-based fluorescence in situ hybridisation for strain-level visualisation of microbial communities.
@sjmcilroy.bsky.social, @benjwoodcroft.bsky.social, @jamesvolmer.bsky.social
doi.org/10.21203/rs....
🧵1/6
@sjmcilroy.bsky.social, @benjwoodcroft.bsky.social, @jamesvolmer.bsky.social
doi.org/10.21203/rs....
🧵1/6
Reposted by Marko Terzin
Fish diversity has changed dramatically on the Great Barrier Reef @earthdotcom.bsky.social
www.earth.com/news/fish-di...
www.earth.com/news/fish-di...
Fish diversity has changed dramatically on the Great Barrier Reef
The team found that the diversity of fish communities across the Great Barrier Reef (GBR) have changed dramatically since the 1990s.
www.earth.com
January 17, 2025 at 4:20 PM
Fish diversity has changed dramatically on the Great Barrier Reef @earthdotcom.bsky.social
www.earth.com/news/fish-di...
www.earth.com/news/fish-di...
🌊🧬🦠 Our new study on seawater microbes from the Great Barrier Reef! 🪸🐠🌊
🔗 microbiomejournal.biomedcentral.com/articles/10....
👇 Key findings in threads below 👇
#CoralReef #Microbiome #MarineScience #GreatBarrierReef #Metagenomics #Monitoring
🔗 microbiomejournal.biomedcentral.com/articles/10....
👇 Key findings in threads below 👇
#CoralReef #Microbiome #MarineScience #GreatBarrierReef #Metagenomics #Monitoring
Gene content of seawater microbes is a strong predictor of water chemistry across the Great Barrier Reef - Microbiome
Background Seawater microbes (bacteria and archaea) play essential roles in coral reefs by facilitating nutrient cycling, energy transfer, and overall reef ecosystem functioning. However, environmenta...
microbiomejournal.biomedcentral.com
January 17, 2025 at 12:29 AM
🌊🧬🦠 Our new study on seawater microbes from the Great Barrier Reef! 🪸🐠🌊
🔗 microbiomejournal.biomedcentral.com/articles/10....
👇 Key findings in threads below 👇
#CoralReef #Microbiome #MarineScience #GreatBarrierReef #Metagenomics #Monitoring
🔗 microbiomejournal.biomedcentral.com/articles/10....
👇 Key findings in threads below 👇
#CoralReef #Microbiome #MarineScience #GreatBarrierReef #Metagenomics #Monitoring
Reposted by Marko Terzin
Check out our new paper!
We compare indicators for monitoring the impacts of island restoration on coral reefs. Massive thanks to our huge list of collaborators, which enabled us to look at seabirds, nutrients, microbes, algae, corals, and fish! 🐦🦠🌱🪸🐠
www.sciencedirect.com/science/arti...
We compare indicators for monitoring the impacts of island restoration on coral reefs. Massive thanks to our huge list of collaborators, which enabled us to look at seabirds, nutrients, microbes, algae, corals, and fish! 🐦🦠🌱🪸🐠
www.sciencedirect.com/science/arti...
January 6, 2025 at 5:18 PM
Check out our new paper!
We compare indicators for monitoring the impacts of island restoration on coral reefs. Massive thanks to our huge list of collaborators, which enabled us to look at seabirds, nutrients, microbes, algae, corals, and fish! 🐦🦠🌱🪸🐠
www.sciencedirect.com/science/arti...
We compare indicators for monitoring the impacts of island restoration on coral reefs. Massive thanks to our huge list of collaborators, which enabled us to look at seabirds, nutrients, microbes, algae, corals, and fish! 🐦🦠🌱🪸🐠
www.sciencedirect.com/science/arti...
Reposted by Marko Terzin
What a way to start the year 😌 ! My 2nd PhD chapter is now out in @commsbio.bsky.social !
We show that macroalgae generate complex chemical and microbial waterscapes.
You like #coralreefs🪸, #fieldstudies🤿 and #multiomics🧪 !? That's for you ➡️ nature.com/articles/s42...
#openaccess #moorea
We show that macroalgae generate complex chemical and microbial waterscapes.
You like #coralreefs🪸, #fieldstudies🤿 and #multiomics🧪 !? That's for you ➡️ nature.com/articles/s42...
#openaccess #moorea
Invasive macroalgae shape chemical and microbial waterscapes on coral reefs - Communications Biology
A field study demonstrates that macroalgae generate complex chemical and microbial waterscapes, which could play essential roles in the function and resilience of coral reefs
nature.com
January 7, 2025 at 2:36 AM
What a way to start the year 😌 ! My 2nd PhD chapter is now out in @commsbio.bsky.social !
We show that macroalgae generate complex chemical and microbial waterscapes.
You like #coralreefs🪸, #fieldstudies🤿 and #multiomics🧪 !? That's for you ➡️ nature.com/articles/s42...
#openaccess #moorea
We show that macroalgae generate complex chemical and microbial waterscapes.
You like #coralreefs🪸, #fieldstudies🤿 and #multiomics🧪 !? That's for you ➡️ nature.com/articles/s42...
#openaccess #moorea