Can't wait to be at @jobim2025.bsky.social #JOBIM25 to present a short demo on the companion ShinyApp (shorturl.at/Os7kB) of our review "Cell-type deconvolution for spatial transcriptomics" recently published in @natrevgenet.nature.com ! #spatial #genomics

Last week to register ! Don't miss this great opportunity

Yes, there's "accessible" in my group's title. Come at me, Trump!

Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.

If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)

Big turnout today in Paris to show solidarity with US-based scientists ❤️ 🗽 #StandUpforScienceFrance @pasteur.fr

Very grateful to have been awarded a #MSCA post-doc fellowship! With Felix Hol and Teun Bousema, we will bring BuzzWatch to the field to study mosquito behavior in malaria-endemic regions.

Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.

Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...

Thrilled to share 'BuzzWatch', my post-doc work with Felix Hol and @lambrechtslab.bsky.social

➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳

preprint🔍 doi.org/10.1101/2025...
DIY guide 🛠️ theomaire.github.io/buzzwatch
🧵⬇️

The Mathematics of Artificial Intelligence: In this introductory and highly subjective survey, aimed at a general mathematical audience, I showcase some key theoretical concepts underlying recent advancements in machine learning. arxiv.org/abs/2501.10465

Excited to share our latest #research from @institutcurie.bsky.social on multimodal prediction of #immunotherapy outcome in #lungcancer, published with @springernature.bsky.social in @naturecomms.bsky.social

rdcu.be/d56Fn

@fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)

Thank you to my PhD supervisors at the Center for Computational Biology at Mines Paris and the Computational Systems Biology Group at Institut Curie. Grateful for our collaborators at Institut Necker Enfants Malade and the support from Vaincre La Mucoviscidose. 5/5

If you are interested in CFTR interactors and the consequences of the absence of CFTR on signalling pathways, you can explore the Shiny application at njmmatthieu.shinyapps.io/shinyapp/ for convenient browsing of the CF network. 4/5

Finally, an important contribution of the present work is that the adopted global methodology of the CF context can be used as a common framework for other monogenic diseases. 3/5

We adopted a data-driven systems biology approach to retrieve CF dysregulated signalling pathways. Our findings point to candidate therapeutic targets such as SYK and PI3KCA, for which specific inhibitors are already known. 2/5

Excited to share the final work from my PhD: our study on developing a signalling network gathering the molecular dysregulations caused by the absence of CFTR in cystic fibrosis (CF).
Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5