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Open Neuroscience

@open-neuroscience.com

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half bot, half human, automatically boosting content related to #openneuroscience https://open-neuroscience.com: community driven repository showcasing #opensource / #openscience #neuroscience projects!

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Open Neuroscience @open-neuroscience.com · Nov 17

👋Hello BlueSky!🧠
👇Below is a thread on Open Neuroscience and how to contribute to our website:
🔬Know a #openscience #neuroscience project?
✍️Please list it on open-neuroscience.com -> forms.office.com/e/5QtUtMc3hw
🔍We will do a brief spam check and upload it to the website!
1/n

https://open-neuroscience.com/en/

open-neuroscience.com

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Open Neuroscience @open-neuroscience.com · 9d

open-neuroscience.com/en/author/ga...

Open Neuroscience @open-neuroscience.com · 9d

🥳Join us in celebrating our new team member!
👨‍🔬Gabriel Araujo Costa, PhD
🧠He has expertise in toxicology, pharmacology, neurobiology, and behavior, with a particular focus on drug addiction and rare diseases.
💡He is co-creating the Portuguese version of our website!
Learn more & contact Gabriel👇

Open Neuroscience @open-neuroscience.com · 21d

📹Webinar recording on NeuroFedora
💡An initiative to provide a ready-to-use Fedora Linux-based Free #OpenSource software platform for #neuroscience.
🧑‍💻Ankur Sinha
🔗https://www.youtube.com/live/2xAK1tY0qro?si=EuQurVxlXwm8qexS
#OpenScience #OpenNeuroscience

Open Neuroscience @open-neuroscience.com · 28d

👀Free online workshop on "Imaging and Workflows:
Handling Biomedical Images and Sharing Reproducible Workflows" organized by @osoh-neuro.bsky.social with @danielneuroglia.bsky.social from the Digital Research Alliance of Canada.
📆Sept 22 at 4 pm EST
✍️Register
tinyurl.com/bdd6hxes
👇More details

Open Science Office Hours @osoh-neuro.bsky.social · Aug 25

📢Join us on our next workshop:
🔬Handling Biomedical Images and Sharing Reproducible Workflows
🧑‍🏫Daniel Manrique-Castano, Curation Officer at the Digital Research Alliance of Canada
📆Sept 22 at 4 pm EST
✍️Register
tinyurl.com/bdd6hxes
👇Book a free one-on-one with Daniel
calendly.com/open-science...

Open Neuroscience @open-neuroscience.com · Sep 7

📹Webinar recording on PiVR
💡The Raspberry Pi-based Virtual Reality system (PiVR)is a system that allows experimenters to immerse small animals in virtual realities.
👨‍🔬With David Tadres & Matthieu Louis
🔗https://www.youtube.com/watch?v=uG898FL421U&t=183s
#OpenScience #Neuroscience #OpenNeuroscience

Open Neuroscience @open-neuroscience.com · Aug 30

📹Webinar recording on DeepLabStream
💡A Python-based multipurpose tool that enables the real-time tracking of animals and manipulation of experiments.
👨‍🔬With Jens Schweihoff
🔗https://www.youtube.com/watch?v=ZspLDZb_kMI
#OpenScience #Neuroscience #OpenNeuroscience

World Wide Series | Open Neuroscience - 07/05/2021 - Jens Schweihoff

YouTube video by Openeuroscience

www.youtube.com

Reposted by Open Neuroscience

accounts-leaving-x.bsky.social @accounts-leaving-x.bsky.social · Aug 24

Open Neuroscience (a user-driven, curated database dedicated to aggregating open neuroscience projects from around the web) has left X (2.384 followers)

Bluesky: @open-neuroscience.com

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Open Neuroscience @open-neuroscience.com · Aug 17

👀Recording of the webinar on Open Ephys @open-ephys.org, #open-source tools for systems #neuroscience.
💡Their ultimate goal is to create a system optimized for tetrodes and optogenetics where users can record and analyse data in real-time.
👨‍🔬With Jakob Voigts
www.youtube.com/live/DmK2Cts...

World Wide Series | Open Neuroscience - 25/06/2021 - Jakob Voigts

YouTube video by Openeuroscience

www.youtube.com

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Reposted by Open Neuroscience

Luisa Pimentel @luisa-pimentel.bsky.social · Jul 21

✍️Apply now for the Neuro-Cooper Open Science Prizes for a chance to:
🏅 Be rewarded for your contributions to #OpenScience in #Neuroscience
🧳 Visit Montreal in the Fall and present your work
🖇️ Connect with a vibrant Open Science community
🏆Bring hope a beautiful and exclusive trophy!
See below how👇

Le Neuro (Institut-Hôpital neurologique de Montréal) @theneuro.bsky.social · Jul 8

Are you leading an #OpenScience initiative advancing the field of #neuroscience? Don’t miss this opportunity to be recognized for your contributions. Submit your application for the Neuro-Irv and Helga Cooper Foundation Open Science Prizes today!
👉Apply now! -link in comments
#neurology #datasharing

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Open Neuroscience @open-neuroscience.com · Jul 15

📹OpenFlexure: a 3D printed flexure translation stage.
💡The stage is capable of sub-micron-scale motion, with very small drift over time. It is ideal for time-lapse protocols that need to be done in space-restricted areas, such as fume hoods.
👨‍🔬Joe Knapper
🔗https://www.youtube.com/watch?v=__mND9BFOts

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Open Neuroscience @open-neuroscience.com · Jun 17

👀Check out this webinar on SpikeInterface: unified Python framework for spike sorting.
💡Build analysis pipelines for spike sorting with a few lines of code.
👨‍🔬Alessio Buccino; Cole Hurwitz; Samuel Garcia; Jeremy Magland; Josh Siegle; Matthias Hennig
🔗https://www.youtube.com/watch?v=p_dd52IzOGo&t=3s

World Wide Series | Open Neuroscience - 11/06/2021 - Alessio Buccino

YouTube video by Openeuroscience

www.youtube.com

Open Neuroscience @open-neuroscience.com · Jun 5

👀Recording of the webinar on the #Miniscope Project: an #open-source collaborative effort created to accelerate innovation of miniature microscope technology and increase global access to it.
👨‍🔬With Daniel Aharoni, who led the development of the Miniscope system.
www.youtube.com/watch?v=JjNS...

The Miniscope Project by Daniel Aharoni

YouTube video by Openeuroscience

www.youtube.com

Open Neuroscience @open-neuroscience.com · May 20

🔊New resource: The Behaviour Forum, a place to discuss experimental methods in animal behaviour
💡This is a global platform bringing together scientists, technicians, and animal welfare experts to advance the study of animal behaviour.
👩‍🔬By COST-TEATIME
🔗Link: open-neuroscience.com/en/post/a_pl...

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Open Neuroscience @open-neuroscience.com · May 9

🔊New resource: Bombcell, automated quality control for extracellular electrophysiology
💡This is an #opensource, user-friendly toolbox that streamlines quality control for spike sorting outputs.
👩‍🔬Develop by Julie M. J. Fabre
🔗Link: open-neuroscience.com/en/post/bomb...
#OpenScience #Neuroscience

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Open Neuroscience @open-neuroscience.com · May 2

🔬 Smart microscopy decouples image acquisition from analysis, allowing for real-time data processing and dynamic adjustments to microscope operations during acquisition.
👀Link and more info here: open-neuroscience.com/en/post/demo...
#OpenScience #Microscopy #OpenNeuroscience

Democratizing Smart Microscopy with navigate | Open Neuroscience

Neuroscientific imaging demands advanced techniques capable of resolving intricate neural circuits, fine axonal structures, and precise synaptic connections within expansive, three-dimensional volumes...

open-neuroscience.com

Open Neuroscience @open-neuroscience.com · May 2

💡Democratizing Smart Microscopy with navigate: #opensource Python software to harness the full potential of light-sheet microscopy, empowering researchers with a flexible and innovative platform for smart microscopy.
👨‍🔬Zach Marin, Xiaoding Wang, Dax Collison, Conor McFadden, Kevin Dean
More details👇

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Open Neuroscience @open-neuroscience.com · Apr 22

🔗Link: open-neuroscience.com/en/post/nc4g...

💡The open-source hardware /software and extensive documentation enable laboratories to build these affordable and robust gates and seamlessly incorporate automatic behavior control into their existing or new rodent tasks.🐀
#OpenScience

NC4Gate: A modular gate system for autonomous control of rodent behavior | Open Neuroscience

Rodent mazes have been used for decades to study the neural basis of behavior. Advancements in rapid prototyping techniques and access to affordable electronics allows laboratories with sufficient exp...

open-neuroscience.com

Open Neuroscience @open-neuroscience.com · Apr 22

💡NC4Gate: A modular gate system for autonomous control of rodent behavior. 🐭 This is a robust mechanical design that can be built using low-cost #openhardware and execute thousands of cycles before maintenance.
👨‍🔬Adam W. Lester, Gurnoor Kaur, Nadira Djafri, Manu S. Madhav
More details and link 👇

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Reposted by Open Neuroscience

Open Science Office Hours @osoh-neuro.bsky.social · Apr 14

🤔 Want to learn the basics of MRI but don't know where to start?
💡 Then join Joyce Li, PhD candidate at the La Piana lab, and the Open Science Office Hours for a free hybrid workshop!
📆 Wed, April 30 at 3:30 pm ET at The Neuro @theneuro.bsky.social or via Zoom.
🍪 Snacks are included
More info 👇

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Reposted by Open Neuroscience

Open Science Office Hours @osoh-neuro.bsky.social · Apr 10

📢NeuroHub - CBRAIN training workshop of 2025
📆Tue, April 29, 2025 from 1:00-3:00 p.m.
🗺️The Neuro @theneuro.bsky.social
👀In person with a remote option available.

✍️Register here:
www.eventbrite.ca/e/neurohub-c...

More info 👇

Open Neuroscience @open-neuroscience.com · Apr 2

🔗Link: open-neuroscience.com/en/post/towa...

👩‍💻By Kendra Oudyk; Jérôme Dockès; Julio Peraza; James Kent; Mohammad Torabi; Michelle Wang; Brent McPherson; Niusha Mirhakimi; Angela R. Laird; Alejandro de la Vega; Jean-Baptiste Poline.

Towards open meta-research in neuroimaging | Open Neuroscience

When meta-research (research on research) makes an observation or points out a problem (such as a flaw in methodology), the project should be repeated later to determine whether the problem remains.

open-neuroscience.com

Open Neuroscience @open-neuroscience.com · Apr 2

💡Towards open meta-research in neuroimaging
👀Find out about living meta-research, the prequels to this idea, and discover the standards and technologies that could assist researchers in doing living meta-research!
👩‍💻Kendra Oudyk @kendra-oudyk.bsky.social et al.
Full list of collaborators and link👇

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Open Neuroscience @open-neuroscience.com · Mar 21

🔗Link to Neurobagel: open-neuroscience.com/en/post/neur...

Neurobagel | Open Neuroscience

Neurobagel aims to connect decentralized neuroimaging datasets using linked data principles while allowing data files and access control to remain with research institutes. The Neurobagel software eco...

open-neuroscience.com

Open Neuroscience @open-neuroscience.com · Mar 21

👀 It provides reusable data schemas and intuitive tools to
1. annotate phenotypic data using widely adopted standardized terminology
2. integrate harmonized metadata in knowledge graphs based on semantic web standards
3. search for and define study cohorts by aggregating participants across datasets

Open Neuroscience @open-neuroscience.com · Mar 21

🖇️Neurobagel aims to connect decentralized neuroimaging datasets using linked data principles while allowing data files and access control to remain with research institutes.
🧑‍💻Sebastian Urchs; Alyssa Dai; Arman Jahanpour; Neurobagel contributors; Jean-Baptiste Poline
🔗Link and more in the comments

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