Eric Perlman 🏳️‍🌈
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perlman.bsky.social
Eric Perlman 🏳️‍🌈
@perlman.bsky.social
Trains, planes & bicycles. Vegetarian food.

Portland, OR based after two decades in Baltimore.

Find me on Mastodon: @[email protected]
If you bike, take a look at www.shift2bikes.org for bike related happenings. We're not quite to pedalpalooza yet, but things are ramping up. This past Saturday had nine events.
Shift
www.shift2bikes.org
April 7, 2025 at 9:42 PM
Endless vegetarian food -- you could easily go only to pure veg restaurants. Suggestions would depend on where you'll be and types of food you enjoy. Take a look at HappyCow for everything from food truck to upscale options. Plus, almost everywhere else is veg friendly.
April 7, 2025 at 9:39 PM
Can we work on faster trains instead?
January 20, 2025 at 10:08 AM
Once upon a time (96? 97?), my friends and I registered zorg.edu (The Zorg Marine Biological - if I recall correctly.) It survived a few years, until we failed to show any form of actual academic affiliation. 🙃
January 13, 2025 at 3:55 AM
Nope -- FRA-CLT
December 9, 2024 at 3:01 AM
Right on red needs to go away. If drivers stop at all, it's only after pulling all the way into the crosswalk.

It's a pleasure to bike in Europe without this behavior!
November 22, 2024 at 6:48 AM
Ooh, I get the rare color photo :)
November 21, 2024 at 1:40 PM
Yeah… it’s not pretty.

I don’t think we have a best practices for this. @joshmoore.bsky.social may have more thoughts on this…

Most tools currently check for .zattrs or zarr.json to determine the version.
November 12, 2024 at 1:44 AM
You’ll find .zattrs with the Zarr v2 version of the data, which we currently reference from images.jax.org: storage.googleapis.com/jax-public-n...
November 12, 2024 at 1:32 AM
Part of the problem is that the NGFF challenge data is in Zarr v3 format. Instead of .zattrs, you get zarr.json: storage.googleapis.com/jax-public-n...
storage.googleapis.com
November 12, 2024 at 1:29 AM
I suspect we'll make progress at next week's OME-NGFF hackathon [ ema.uzh.ch/RM3FJ ]. Java is one of tracks, and John will be in attendance... I'm hoping we get standardized support for transforms done (including both multiscale and multimodality)
OME-NGFF Workflows Hackathon 2024
November 18th - 22nd | University of Zurich, Irchel Campus
ema.uzh.ch
November 11, 2024 at 7:39 PM
Correct. Data listing *is* disabled, but that is not a problem for NGFF. Fortunately, one does not have to guess filenames, thats's what the spec is for.

Can you try the links at bsky.app/profile/perl... ?
November 11, 2024 at 4:46 PM
We don't allow data listing. If you click through the links above, the NGFF validator has no trouble accessing the data.

What Zarr client or viewer are you using to access the data? The N5-Java libraries used to expect local filesystem semantics (like list) but I thought that had been fixed.
November 11, 2024 at 4:44 PM
Here are validator links for both versions of the data:

v2: ome.github.io/ome-ngff-val...

v3: ome.github.io/ome-ngff-val...
OME-NGFF validator
ome.github.io
November 11, 2024 at 4:13 PM
What Zarr library are you using? Does it support v3 w/ sharding?

Can you try the Zarr v2 version of the data?
storage.googleapis.com/jax-public-n...
storage.googleapis.com
November 11, 2024 at 4:11 PM
I am team window all the way. It's easier when there are no shades and you can look forward as well 😉. (These are from my flight to Friday Harbor Marina from South Lake Union)
July 29, 2024 at 12:02 AM
The staff at BWI were happy to be working again. (It was sad to hear that contract staff were basically unpaid for the duration of the grounding.)
January 28, 2024 at 10:07 PM
I'll be on one in a few hours! Today may be my first Alaska travel day of 2024 to go remotely close to plan. 🤞
January 28, 2024 at 9:15 PM