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rohitsatyam.bsky.social
Rohit Satyam
@rohitsatyam.bsky.social
20 followers 100 following 7 posts
PhD candidate in KAUST. Love coding in R and Nextflow. Wanna collaborate? Get in touch at [email protected].
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rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Annotate with me hypothetical proteins in VEuPathDB using plasmoRUtils to shortlist literature first and then generate a summary of genes using Prototype AI tool being developed by @veupathdb.org. here is a thread.
rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Annotated 26 hypothetical proteins manually in 2 days. Wanna know how? I ran searchGSC function in a loop every 5 minutes to mimic the manual query to retrieve article links from year 2019 to 2025 and dumped these results as CSV files. Some files will be empty while some will contain link to thesis
rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Annotate with me hypothetical proteins in VEuPathDB using plasmoRUtils to shortlist literature first and then generate a summary of genes using Prototype AI tool being developed by @veupathdb.org. here is a thread.
rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Annotated 26 hypothetical proteins manually in 2 days. Wanna know how? I ran searchGSC function in a loop every 5 minutes to mimic the manual query to retrieve article links from year 2019 to 2025 and dumped these results as CSV files. Some files will be empty while some will contain link to thesis
rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Once you review the description, add the comment to the database as user comment. Now you might ask too many hypothetical genes means too many CSV file, do I have to open all of them. No, just look at the file size, if it is 42 bytes then searchGSC didn't return any results.
rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Now go through the links one by one and query your gene ID. If its occurrence is more than 1 you might want to read. Also search gene ID + thesis author and you will get to the published article. Now you can use the VEuPathDB experimental AI paper summary tool to see if any function is detected.
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rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 20d
Annotated 26 hypothetical proteins manually in 2 days. Wanna know how? I ran searchGSC function in a loop every 5 minutes to mimic the manual query to retrieve article links from year 2019 to 2025 and dumped these results as CSV files. Some files will be empty while some will contain link to thesis
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rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · 23d
Join me on 16 Sept 8-9 AM (Boston time Zone i.e. 3 PM KSA) as I present my R package on how to access VEuPathDB component databases and several other database virtually in MPM XXXVI conference.

rohit-satyam.github.io/plasmoRUtils...

#plasmodium #pathogen
@veupathdb.org @parasitesrule.org
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rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · Jun 2
Is it possible to have training on RIP-seq analysis and Co-IP data analysis?
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rohitsatyam.bsky.social
Rohit Satyam @rohitsatyam.bsky.social · Jan 30
My heartfelt thanks to you for making our lives easier @teunbrand.bsky.social
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