Shaun McKinnie
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shaunmckinnie.bsky.social
Shaun McKinnie
@shaunmckinnie.bsky.social
Associate Professor of Chemistry/Biochemistry at UC Santa Cruz - organic chemistry/ biosynthesis/biocatalysis - dogs/Oilers hockey 🇨🇦➡️🇺🇸
Introducing the new McKinnie lab aka the ChemPop (Ph)Demon Hunters!

Incredibly fun participating in the annual Chemistry and Biochemistry Department Halloween Costume Party - it’s always exciting to see everyone’s costumes, creativity, and acting talent on full display!
October 31, 2025 at 9:35 PM
Huge congratulations to Dr. Jennifer Cordoza for completing her PhD (aka PLPhD) and giving a tour-de-force dissertation seminar on PLP enzyme discovery, early biocatalytic application, and phenomenal undergrad mentoring efforts! Congrats again Dr. Cordoza, we’re all very proud of you!!
October 31, 2025 at 2:15 AM
Reposted by Shaun McKinnie
IDBac: an open-access web platform and compendium for the identification of bacteria by MALDI-TOF mass spectrometry. https://www.biorxiv.org/content/10.1101/2025.10.15.682631v1
October 16, 2025 at 2:17 AM
Thrilled to share our latest pre-print where our 2023-2024 class of 12 talented undergraduate researchers and (now Dr.) Austin Hopiavuori interrogated the unique nonheme iron enzyme BesE using a chemical and biochemical approach! Check it out here:

www.biorxiv.org/content/10.1...
CURE-ating the substrate scope and functional residues of nonheme iron(II) α-ketoglutarate dependent hydroxylase BesE
Nonheme iron (II) α-ketoglutarate-dependent dioxygenases (Fe/αKGs) play important roles in functionalizing biological substrates from individual amino acids up to macromolecules. BesE, a unique homolo...
www.biorxiv.org
October 14, 2025 at 8:53 PM
Tenured!

It’s been a remarkable six years at UC Santa Cruz full of many unexpected obstacles but even more triumphs! I’m incredibly proud of the phenomenal team that we’ve assembled and am excited to have the continued opportunity to grow and share our collective successes!
July 1, 2025 at 3:49 PM
Congrats to Dr. Austin Hopiavuori for giving a masterful dissertation seminar today and being McKinnie lab PhD #2! Austin has done phenomenal work on biosynthetic non-heme iron enzymes and helped quarterback our inaugural CURE lab last year. Incredibly proud of you Dr. Hopiavuori!
May 28, 2025 at 3:32 AM
Huge congrats to Dr. Jackson Baumgartner for completing his PhD dissertation seminar this afternoon! Jackson was an inaugural lab member and has done a phenomenal job exploring VHPO enzymology! Incredibly proud of all your achievements Dr. Baumgartner and thanks for being PhD #1 from McKinnie lab!
May 24, 2025 at 1:48 AM
Come be our colleague! UCSC Chemistry and Biochemistry is looking for a tenure track Assistant Teaching Professor for general chemistry courses!
The Department of Chemistry & Biochemistry @UCSC
invites applications for an Assistant Teaching Professor. Looking for a dedicated faculty member to bring enthusiasm/excitement to the delivery of undergrad instruction, deadline 5/14/25!
recruit.ucsc.edu/JPF01884
General Chemistry Assistant Teaching Professor (Initial Review Date: May 14, 2025)
University of California, Santa Cruz is hiring. Apply now!
recruit.ucsc.edu
April 9, 2025 at 2:48 PM
Reposted by Shaun McKinnie
Hi all, I'm hiring a junior specialist/research technician for my lab at UCSC. An ideal applicant would be an undergraduate who would like more research experience before applying for grad school but all are welcome to apply 🧪
recruit.ucsc.edu/JPF01882
Bhalla Lab - Research Specialist (Junior Specialist)
University of California, Santa Cruz is hiring. Apply now!
recruit.ucsc.edu
April 1, 2025 at 8:09 PM
Reposted by Shaun McKinnie
Really fun visit to @ucsantacruz.bsky.social for a seminar
Huge thanks to @drlaurasanchez.bsky.social for the invite
Tried my best to channel banana slugs and was rewarded with a couple along the walk in 😁
April 8, 2025 at 7:03 PM
Reposted by Shaun McKinnie
👋 first post here! I’m excited to start by sharing our work on CRISPRa-programmed embryo models! We show that CRISPR activation of 2 elements is sufficient to form an embryo model similar to a natural embryo www.sciencedirect.com/science/arti... @cp-cellstemcell.bsky.social @ucscgenomics.bsky.social
March 20, 2025 at 10:06 PM
Thrilled to team up with @drlaurasanchez.bsky.social, @robbieshepherd.bsky.social, Conrad, and Alex and summarize a great amount of work around how advances in MS have accelerated high throughput screening for enzyme evolution! Also excited to share our collaborative work in this area pretty soon 👀!
March 3, 2025 at 6:03 PM
Phenomenal seminar by Prof. Jaclyn Winter today at UCSC! Remarkable and inspiring work on Great Salt Lake microbiology, metagenomics, biosynthesis, NP isolation, structure elucidation and so much more - huge thanks for making the trip out here Jackie!
February 25, 2025 at 1:43 AM
Reposted by Shaun McKinnie
Better late than never, loved hosting Dr Moore @ucsantacruz.bsky.social we enjoyed a nice hike before this rain curtesy of @shaunmckinnie.bsky.social #workhusbands #peptides
February 14, 2025 at 3:56 AM
Reposted by Shaun McKinnie
Super stoked to share this pre-print covering our work on some sulfotransferase enzymes with surprising stereoselectivity!

doi.org/10.26434/che...
Specificity and Stereoselectivity of Cryptic Sulfotransferases
Sulfotransferases (STs) are ubiquitous enzymes found in all living organisms. These enzymes convert amines to sulfamates, and alcohols to sulfates, on a wide variety of biologically relevant molecules...
doi.org
February 5, 2025 at 11:35 PM
I got a sneak peek of this awesome story in Dec. 2023 by being on Dr. Manasa Ramachandra’s excellent PhD defense committee! And was so impressed that we had to recruit her as a postdoc for our own oxidative cyclase projects! Huge congratulations Manasa, @avenaross.bsky.social and team!
So thrilled to have this story out in the world! Awesome work from Dr. Ramachandra, current grad student Josh Innis and Dr. Yu!!
pubs.acs.org/doi/10.1021/...
Activation of Primary C–H Bonds in Oxidative Cyclizations of Tambjamines Catalyzed by Rieske Oxygenases TamC and PtTamC
Tambjamines are complex bipyrrole-containing natural products that possess promising bioactive properties. Although Pseudoalteromonas citrea is known to produce both cyclic tambjamine MYP1 and the linear precursor (YP1), the biosynthetic machinery used to catalyze the site-selective oxidative carbocyclization at the unactivated 1° carbon of YP1 has remained unclear. Here, we demonstrate that a three-component Rieske system consisting of an oxygenase (TamC) and two redox partner proteins is responsible for this unprecedented activity on YP1 and potentially, a non-native substrate (BE-18591). We also show that a homologous oxidase from Pseudoalteromonas tunicata (PtTamC) can function together with the partner proteins from P. citrea to process both YP1 and BE-18591. These reactions represent the first Rieske oxygenase-catalyzed activations of C–H bonds at 1° carbons, resulting in carbon–carbon bond formation. The use of TamC and PtTamC to potentially generate the new-to-nature cyclic analogue of BE-18591 suggests the enormous biocatalytic potential of these Rieske systems to facilitate late-stage oxidative cyclizations at terminal C(sp3)–H bonds.
pubs.acs.org
January 29, 2025 at 11:34 PM
Reposted by Shaun McKinnie
Come be my colleague! We’re hiring an assistant professor in marine natural products and marine biotechnology at SIO - check out this link to learn more: apol-recruit.ucsd.edu/JPF04101
Marine Natural Products/Marine Biotechnology - Assistant Professor
University of California, San Diego is hiring. Apply now!
apol-recruit.ucsd.edu
December 5, 2024 at 1:23 AM
Amazing seminar from Aaron Puri today who shared his lab’s work on microbial chemical ecology, natural product chemistry, biosynthesis, and cool new analytical techniques! Thanks for making the trip out to UCSC!
December 17, 2024 at 5:00 AM
Reposted by Shaun McKinnie
Excited to have Arron Puri visiting @ucsantacruz.bsky.social for #SMComm today @shaunmckinnie.bsky.social
December 17, 2024 at 12:04 AM