Tom Fay
@tompfay.bsky.social
230 followers 360 following 27 posts
Theoretical chemist by day. Vegan by night. (Also vegan by day too.) Assistant professor at UCLA. Views are my own. Group site: https://faygroupucla.github.io Orcid: https://orcid.org/0000-0003-0625-731X
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tompfay.bsky.social
This opens the door to studying more complex processes like charge transfer and non-adiabatic dynamics in the condensed phase. The methods are implemented in the OpenESPF code available here: github.com/tomfay/opene... It combines PySCF for QM calculations and OpenMM for GPU accelerated MM.
GitHub - tomfay/openespf: A python toolkit for performing polarizable QM/MM simulations.
A python toolkit for performing polarizable QM/MM simulations. - tomfay/openespf
github.com
tompfay.bsky.social
We've also developed the machinery to treat periodic boundary conditions and calculate forces for ground and excited states. In the paper we demonstrate that we can calculate fluorescence spectra with tens of nanoseconds of excited state QM/MM molecular dynamics with state-specific MM polarisation.
tompfay.bsky.social
The last paper from my postdoc at Aix-Marseille has just been published in the Journal of Chemical Theory and Computation! doi.org/10.1021/acs....

We developed an efficient method, which we call DREEM, QM/MM simulations including electronic polarisability in MM atoms in a QM state specific way.
Analytic Gradients and Periodic Boundary Conditions for Direct Reaction Field Polarizable QM/MM with Electrostatic Potential Fitting
Our recently developed Direct Reaction field with ESPF Embedding Model (DREEM) method offers an efficient and physically rigorous framework for incorporating polarizable molecular mechanics (MM) environments into quantum mechanics/molecular mechanics (QM/MM) simulations. By coupling the QM and MM regions through the instantaneous MM electrostatic polarization response to QM charge density fluctuations, DREEM enables consistent treatment of ground and excited electronic states, capturing electronic state-specific polarization and dispersion effects absent in conventional mean-field or linear response approaches. The use of the electrostatic potential fitting (ESPF) approximation method to describe charge density fluctuations significantly improves the computational efficiency compared to the integral-exact direct reaction field. In this work, we present two methodological advancements to extend the applicability of DREEM to realistic condensed-phase simulations: first, the development of efficient analytic energy gradients, enabling geometry optimization, transition state searches, and molecular dynamics; and second, a formulation of periodic boundary conditions (PBC) compatible with the DREEM framework. These capabilities are implemented in the open-source OpenESPF code, interfacing PySCF and OpenMM for high-performance QM and MM calculations. We demonstrate that the resulting implementation enables practical simulations of excited-state optical properties in periodic polarizable environments, where we calculate the fluorescence spectrum of acetone in water, including quantum vibronic and non-Condon effects. This paves the way for predictive modeling of photochemical reactivity and spectroscopy in complex systems where environment polarization is important.
doi.org
tompfay.bsky.social
I'm also going to take this opportunity to advertise again that I'm recruiting postdocs to work in my group. If you have an interest in quantum dynamics, excited states, electron/energy transfers, or other things my group does (see here faygroupucla.github.io) please do get in touch.
tompfay.bsky.social
This work describes a new mechanism by which reactions of spin-polarised radicals, high energy intermediates encountered in lots of chemistry, can selectively react to form different chiral products. This could implications for the chemistry of the origin of life.
tompfay.bsky.social
There are lots of great things about the British university system, but I do worry what effect something like this would have on early career researchers and in general the scientific research output from universities.
www.bbc.com/news/article...
University fees could be linked to teaching standards, regulator says
England's universities regulator says some institutions might have to charge less than others.
www.bbc.com
Reposted by Tom Fay
tompfay.bsky.social
Fascinating to see that French "tacos" have made to LA as the "FrenchFold".
tompfay.bsky.social
#theoreticalchemistry #theochem #chemistry #quantum #quantumbiology #physchem
tompfay.bsky.social
Probably my zaniest preprint to date just came out. I've explored the possibility that reactions of radical pairs can become enantioselective when one of the radicals is spin-polarised.
arxiv.org/abs/2507.08287
tompfay.bsky.social
All of this is implemented in the freely available OpenESPF code: github.com/tomfay/opene... . This interfaces PySCF for QM calculations and OpenMM for polarisable MM calculations (with GPU acceleration). Lots of examples are included in the git repo!
GitHub - tomfay/openespf: A python toolkit for performing polarizable QM/MM simulations.
A python toolkit for performing polarizable QM/MM simulations. - tomfay/openespf
github.com
tompfay.bsky.social
With this we've been able to run 10s of picoseconds of excited state, polarisable QM/MM molecular dynamics, with rigorously treated periodic boundary conditions. We can also run calculations with well over 100,000 polarisable MM atoms.
tompfay.bsky.social
If I want to send a message to my bank I first need to start a chat with a chatbot, which I need to persuade to connect me to a second AI chatbot which I then need to persuade to connect me to a person... 🙃
Reposted by Tom Fay
sato51643335.bsky.social
Based on the outcomes of our project, we have created a pamphlet designed to be used in research laboratories. #researchintegrity #researchclimate #researchmisconduct
tompfay.bsky.social
Hope you're enjoying your trip! When you're next in the US you'd be welcome to come visit UCLA as well!
Reposted by Tom Fay
huixrotllant.bsky.social
A PhD position in theoretical chemistry (2025-2028) is available in my group starting in October. Info&Apply: huixrotllant.github.io/openings.html #academicjobs #compchem Please RT
Openings
huixrotllant.github.io