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djosergenomics.github.io
Djoser Genomics
@djosergenomics.github.io
1.2K followers 8K following 120 posts
Exploring #ComputationalBiology & #Bioinformatics + Documenting my learning journey | Built by @noureldenrihan.bsky.social | 🌐 djosergenomics.github.io
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Djoser Genomics @djosergenomics.github.io · May 21
A major milestone: my first RNAseq preprint is now live on bioRxiv 🎉🎊

I reanalyzed public data from the human SCG to uncover neuroimmune signatures during cardiac disease.🧬🖥️

This was an awesome learning experience and I am excited use everything I learned for new project ideas :D.

#Bioinformatics
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bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · May 21
Transcriptomic Signatures of Neuroinflammation and Adaptive Immunity in the Human SCG During Cardiac Disease: A Bulk RNA-seq Reanalysis https://www.biorxiv.org/content/10.1101/2025.05.18.654713v1
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Djoser Genomics @djosergenomics.github.io · 25d
🥳 Happy 1st Birthday to Djoser Genomics! 🥳

From starting Djoser Genomics, Learning and Exploring Various Projects, to publishing my first preprint and creating the Bulk RNAseq Tutorial Codex!

Thank you for being part of this journey so far. Here’s to Year Two. 🚀

#Bioinformatics #DjoserGenomics
Djoser Genomics: Year One
Today marks Djoser Genomics’ 1st Birthday.
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Djoser Genomics @djosergenomics.github.io · Aug 20
🎉 The Bulk RNAseq Tutorial Codex is now complete! 🎉

From dataset discovery all the way to enrichment analyses

Every scroll 📜 is now available, covering alignment, quantification, DEGs, visualization & everything in between

The Codex is yours to explore ✨

#RNAseq #Bioinformatics #scicomm
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Djoser Genomics @djosergenomics.github.io · Aug 4
🧬 Introducing the Bulk RNA-seq Tutorial Codex.

A step-by-step series where I guide you through real transcriptomics analysis, one scroll at a time.

Check out the blog post and follow the codex 👉 djosergenomics.github.io/Bulk-RNAseq-...

#Bioinformatics #RNAseq #scicomm
Djoser’s Bulk RNAseq Tutorial Codex
A beginner friendly bulk RNAseq tutorial series told through step by step guides and inspired by ancient Egyptian History.
djosergenomics.github.io
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Reposted by Djoser Genomics
rhystwhite.bsky.social
Rhys White @rhystwhite.bsky.social · Aug 18
New Zealand’s prescribing habits likely helped create a homegrown #MRSA 🇳🇿🧬💊

Now ‘AK3’ has been detected overseas

Our recent study shows how it evolved & how #Genomics can help reduce the impact of the next ‘superbug’

#AMR is an issue for everyone
#SciComm

🖥️🧬💻
#AcademicSky
#MicroSky
🧪🧫🦠
aunz.theconversation.com
The Conversation AUNZ @aunz.theconversation.com · Aug 18
Over-subscription of a topical antibiotic likely led to the emergence of a superbug which is now the leading cause of resistant infections.
Antibiotic use likely fuelled the rise of a ‘superbug’ in NZ – genomics offers a defence against the next threat
theconversation.com
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Djoser Genomics @djosergenomics.github.io · Aug 15
📜 Scroll VIII: Djoser's Discoveries!

The Grand Finale, we dive into Gene set Enrichment Analysis (GSEA), why we do it, how we do it and how to visualize and interpret it.

Check it out: djosergenomics.github.io/Scroll-8-Djo...

#bioinformatics #RNAseq #scicomm
Scroll 8 of Bulk RNAseq Tutorial Codex: Djoser's Discoveries
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Djoser Genomics @djosergenomics.github.io · Aug 15
📜 Scroll VII: Thutmose's Trends!

Here, We identify Trends among our DEGs using Functional (GO) and Pathway (KEGG) Enrichment Analysis!

Check it out: djosergenomics.github.io/Scroll-7-Thu...

#bioinformatics #RNAseq #scicomm
Scroll 7 of Bulk RNAseq Tutorial Codex: Thutmose's Trends
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Djoser Genomics @djosergenomics.github.io · Aug 14
📜 Scroll VI: Ramses' Plots!

We dive into Visualizations!

MA, PCA, Volcano Plots and Heatmaps!

Check it out: djosergenomics.github.io/Scroll-6-Ram...

#bioinformatics #RNAseq #scicomm
Scroll 6 of Bulk RNAseq Tutorial Codex: Ramses' Plots
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Djoser Genomics @djosergenomics.github.io · Aug 12
📜 Scroll V: Menkaure's Measures!

We dive into Differential expression analysis (DEA), using DESeq2, and how to interpret the findings

Check it out: djosergenomics.github.io/Scroll-5-Men...

#bioinformatics #RNAseq #scicomm
Scroll 5 of Bulk RNAseq Tutorial Codex: Menkaure's Measures
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fiosgenomics.bsky.social
Fios Genomics @fiosgenomics.bsky.social · Aug 11
Q: What can we learn about plants via metabolomics analysis? 🌱🤔
A: Lots of interesting and useful things! Read our blog to find out what they are:
www.fiosgenomics.com/plant-metabo...

#metabolomics #plantmetabolomics #metabolomicsanalysis #bioinformatics
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Djoser Genomics @djosergenomics.github.io · Aug 9
📜 Scroll IV: Khafre’s Connections is here!

We step into the next stage of our RNAseq journey!
Importing Kallisto results into R, linking them to gene annotations, & building a strong foundation for downstream analysis

Here: djosergenomics.github.io/Scroll-4-Kha...

#bioinformatics #RNAseq #scicomm
Scroll 4 of Bulk RNAseq Tutorial Codex: Khafre’s Connections
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Djoser Genomics @djosergenomics.github.io · Aug 7
🧬 Scroll 3 of the Bulk RNA-seq Tutorial Codex is here!

⚒️ Guided by King Khufu, we pseudoalign our reads using Kallisto — fast, efficient, and accurate.

🌐 Full tutorial + cultural spotlight:

📜 djosergenomics.github.io/Scroll-3-Khu...

#RNAseq #bioinformatics #scicomm
Scroll 3 of the Bulk RNA-seq Tutorial Codex: Khufu's Calculations
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Djoser Genomics @djosergenomics.github.io · Aug 5
🔍 Scroll 2 of Djoser’s Bulk RNAseq Tutorial Codex is here!

We dive into RNA-seq Quality Control with FASTQC — guided by Hesy-Ra, the first known dentist & physician in history.

🧪 Read here: djosergenomics.github.io/Scroll-2-Hes...

#bioinformatics #RNAseq #scicomm
Scroll 2 of Djoser’s Bulk RNAseq Tutorial Codex: Hesy-Ra's Diagnostics
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Djoser Genomics @djosergenomics.github.io · Aug 5
Did you know? 🧠

The Original Step Pyramid that inspired our logo was designed by Imhotep — the same ancient figure featured in Scroll 1 of our Bulk RNAseq Tutorial Codex.

Dive in Now ↓

#RNAseq #Bioinformatics #SciComm
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Djoser Genomics @djosergenomics.github.io · Aug 5
🎊 Scroll 1 of Djoser’s Bulk RNAseq Tutorial Codex: Imhotep's Insights 🎊

We start by collecting real RNA-seq data from ENA using Google Colab.

Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser.

📜 Check it out: djosergenomics.github.io/Scroll-1-Imh...

#bioinformatics #RNAseq
Scroll 1 of Djoser’s Bulk RNAseq Tutorial Codex: Imhotep's Insights
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Djoser Genomics @djosergenomics.github.io · Aug 5
🎊 Scroll 1 of Djoser’s Bulk RNAseq Tutorial Codex: Imhotep's Insights 🎊

We start by collecting real RNA-seq data from ENA using Google Colab.

Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser.

📜 Check it out: djosergenomics.github.io/Scroll-1-Imh...

#bioinformatics #RNAseq
Scroll 1 of Djoser’s Bulk RNAseq Tutorial Codex: Imhotep's Insights
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djosergenomics.github.io
Djoser Genomics @djosergenomics.github.io · Aug 4
🧬 Introducing the Bulk RNA-seq Tutorial Codex.

A step-by-step series where I guide you through real transcriptomics analysis, one scroll at a time.

Check out the blog post and follow the codex 👉 djosergenomics.github.io/Bulk-RNAseq-...

#Bioinformatics #RNAseq #scicomm
Djoser’s Bulk RNAseq Tutorial Codex
A beginner friendly bulk RNAseq tutorial series told through step by step guides and inspired by ancient Egyptian History.
djosergenomics.github.io
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djosergenomics.github.io
Djoser Genomics @djosergenomics.github.io · Aug 2
I'm planning on making a series of mini blog tutorials on bulk RNAseq, they'll be beginner friendly to help someone who's just starting.

I'm also planning to theme it around ancient Egypt just like Djoser ;D

So stay tuned!

#Bioinfomatics #RNAseq
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Reposted by Djoser Genomics
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Narita Lab @narita-lab.bsky.social · Jul 29
Only a few days left to apply to join our lab and do exciting senescence research at the University of Cambridge Cancer Research UK Cambridge Institute @cruk-ci.bsky.social @cam.ac.uk 🧪🧬

You can also send informal enquiries (info below):

www.jobs.cam.ac.uk/job/52026/
www.jobs.cam.ac.uk/job/52027/
a cartoon character is surrounded by cats and the caption says when someone asks you what your dream job is
ALT: a cartoon character is surrounded by cats and the caption says when someone asks you what your dream job is
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Narita Lab @narita-lab.bsky.social · Jul 25
Spread the news! We are excited to expand our research team, working on cellular senescence, at the Cancer Research UK Cambridge Institute, University of Cambridge.

jobs.cam.ac.uk/job/52026/
jobs.cam.ac.uk/job/52027/
a yellow sign that says we 're hiring
ALT: a yellow sign that says we 're hiring
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Mallory Freeberg @malloryfreeberg.bsky.social · Jul 26
🧬💻 We're hiring a #Software #Developer @emblebi.bsky.social! Join the @deciphergenomics.bsky.social team building tools for global rare disease diagnosis & research. Work that matters, in a collaborative environment.
👉 Apply: embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
⏰ Deadline: 10 August
Software Developer
In this role, you will have the opportunity to develop domain area expertise in human genetics while working with a modern technology stack. You will design, develop and support the DECIPHER platform,...
embl.wd103.myworkdayjobs.com
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Djoser Genomics @djosergenomics.github.io · Jul 23
🚀New Blog Post!

Just finished a training project on variant calling using zebrafish data from @uofglasgow.bsky.social study on fisheries selection (PRJNA630223)

Walked through the full pipeline: QC → alignment → variant calling → VEP annotation

#Genomics #Zebrafish #Bioinformatics #VariantCalling
Discovering Mutations in fisheries-induced Selection of Zebrafish
Zebrafish Variant Calling Training Project
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Djoser Genomics @djosergenomics.github.io · Jul 8
📚Looking for some textbooks or reviews for learning genomics, gene editing, and molecular biology.

Trying to build a solid foundation, Any recommendations?
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Reposted by Djoser Genomics
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Gael Cristofari @retrogenomics.bsky.social · Jul 11
🦟 Bioinformatics Research Scientist position open in my lab in Nice (FR) to study Aedes mosquito retrotransposons & their interactions with arboviruses collab w/ @salehlabparis.bsky.social & @lambrechtslab.bsky.social
Apply: euraxess.ec.europa.eu/jobs/359830
Please boost! #ArboRetro #Bioinformatics
Aedes albopictus (asian tiger mosquito)
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Reposted by Djoser Genomics
hsiehyp.bsky.social
hsiehyp.bsky.social @hsiehyp.bsky.social · Jul 10
Exciting news! I am launching the Lab of Polymicrobial Interaction & Evolution at IPMB at Academia Sinica (ipmb.sinica.edu.tw/en)! 🎉Our brand-new website is live: (www.labofpie.org). Check the lab of PIE out!!🥧🎈
IPMB | 中央研究院植物暨微生物學研究所
ipmb.sinica.edu.tw
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Djoser Genomics @djosergenomics.github.io · Jul 9
Welcome! 👋
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Ming Tommy Tang @tommytang.bsky.social · Jul 9
I had a roadmap for biology -> computation. What about the reverse?

Many with a computer science background are asking: where should they start to learn biology?
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Djoser Genomics @djosergenomics.github.io · Jul 8
📚Looking for some textbooks or reviews for learning genomics, gene editing, and molecular biology.

Trying to build a solid foundation, Any recommendations?
3 6