Olivier Borkowski
@oborkowski.bsky.social
1.1K followers 580 following 340 posts
Tenured Scientist in Synthetic Biology (INRAE, Paris Area, France) #CellFree ⦁ #SynBio ⦁ #Bioengineering ⦁ #Microbiology https://sites.google.com/view/olivierborkowski
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oborkowski.bsky.social
New on @biorxiv!!!!!!
We’re excited to share our latest paper on combining cell-free systems and machine learning to express full genome in vitro.

Check it out now! 👉 www.biorxiv.org/content/10.1...

Catch us at SEED in Houston this June to discuss this work.
#CellFree
Reposted by Olivier Borkowski
jamesbriscoe.bsky.social
The @crick.ac.uk is recruiting Early Career Group Leaders

- Lab set-up, research costs, salaries for up to 5 researchers
- Support for up to 12 years
- Access to our core facilities
- Competitive salary
- Fantastic colleagues
- All areas of biology

Deadline 27 Nov

www.crick.ac.uk/careers-stud...
Early career group leaders
We appoint researchers from across biology and biomedicine to set up their first groups at the Crick.
www.crick.ac.uk
Reposted by Olivier Borkowski
igemhq.bsky.social
From sequencing to lab automation, meet the companies shaping the future of SynBio at the 2025 iGEM Grand Jamboree.

@nanopore – Booth X18
LinkZill – Booth X19
@opentrons – Booth X20

See the full program and grab your ticket: jamboree.igem.org
oborkowski.bsky.social
Sequence-free landscape inference for directed evolution
doi.org/10.1101/2025...
oborkowski.bsky.social
Mycoelectronics: Bioprinted Living Fungal Bioelectronics for Artificial Sensation
doi.org/10.1101/2025...
Reposted by Olivier Borkowski
ricardsole.bsky.social
How can biological systems anticipate future events? In our new paper with @jordiplam.bsky.social, we show how a simple genetic circuit can predict future trends through a simple (and perhaps widespread) mechanism @drmichaellevin.bsky.social @koseskalab.bsky.social www.biorxiv.org/content/10.1...
oborkowski.bsky.social
Strategies for engineering domesticated and undomesticated human microbes
doi.org/10.1016/j.co...
oborkowski.bsky.social
SHARK: a specialized host for assembling R6K plasmids
doi.org/10.1101/2025...
oborkowski.bsky.social
Microbial stem cells support productivity in dedicated factory cells in an asymmetrically dividing E. coli system
doi.org/10.1101/2025...
oborkowski.bsky.social
Cell-free opens a unique test-bed to reconstituteand to explore alternative life possibilities.

Check our review (by Maud Hofmann, Farouk Abdo, @manishmicrobe and myself) :

Reconstituting alternative life using the test-bed of cell-free systems
doi.org/10.1098/rstb...
oborkowski.bsky.social
Cell-free systems enable mechanistic characterization of genetically encoded RNA strand exchange circuits for programmable protein expression
doi.org/10.1101/2025...
oborkowski.bsky.social
A tool for modeling gene regulatory networks (GRN_modeler) and its applications to synthetic biology
doi.org/10.1038/s443...
oborkowski.bsky.social
A Decade of SBOL Visual: Growing Adoption of a Diagram Standard for Engineering Biology
pubs.acs.org/doi/10.1021/...
Reposted by Olivier Borkowski
biorxiv-synthbio.bsky.social
Generative design of synthetic gene circuits for functional and evolutionary properties https://www.biorxiv.org/content/10.1101/2025.09.26.678595v1
oborkowski.bsky.social
Black-box optimization in immunology and beyond: A practical guide to algorithms and future directions
doi.org/10.1016/j.al...
Reposted by Olivier Borkowski
dijiang319.bsky.social
@science.org Deazaguanylation is a nucleobase-protein conjugation required for type IV CBASS #immunity | Science www.science.org/doi/10.1126/... ❄️🔬🧬🦠🧫
oborkowski.bsky.social
Modular Machine Learning with Applications to Genetic Circuit Composition
doi.org/10.48550/arX...
oborkowski.bsky.social
Cell-free recombinase-integrated Boolean output system
doi.org/10.1016/j.ce...