Sophie Abby
@soabby.bsky.social
720 followers
230 following
22 posts
Researcher at CNRS, TIMC lab, Grenoble France
compBio@TrEE group https://tree-timc.github.io/compbio
Archaea & Bacteria Evolution
Comparative genomics and Phylogenomics
Evolution of Cellular machineries & Metabolic pathways
https://sophieabby.github.io
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![Exploring the space of self-reproducing RNA using generative models, Martin Weigt
Exploring the archaic introgression landscape of admixed populations through
joint ancestry inference, Jazeps Medina Tretmanis [et al.]
Predicting natural variation in the yeast phenotypic landscape with machine
learning, Sakshi Khaiwal [et al.]
Phylodynamic modeling with unsupervised Bayesian neural networks, Marino
Gabriele [et al.]
Likelihood-free inference of phylogenetic tree posterior distributions, Luc Blas-
sel [et al.]
Generative continuous time model reveals epistatic signatures in protein evolu-
tion, Barrat-Charlaix Pierre
Neural posterior estimation for high-dimensional genomic data from complex pop-
ulation genetic models, Jiseon Min [et al.]
A differentiable model for detecting diversifying selection directly from alignments
in large-scale bacterial datasets, Leonie Lorenz [et al.]
Detecting interspecific positive selection using transformers, Charlotte West [et al.]
Predicting Multiple Sequence Alignment Uncertainty via Machine Learning, Lucia
Martin-Fernandez [et al.]
Graph Neural Networks for Likelihood-Free Inference in Diversification Mod-
els, Amélie Leroy [et al.]
Popformer: learning general signatures of genetic variation and natural selection
with a self-supervised transformer, Leon Zong [et al.]](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:7x5c6ifrcznmg4mzhfuc2a6r/bafkreidur7bz43o2jhwr4gbt36awozawqthbkkfeszxjkxf4kvhyh7q6du@jpeg)
![PRIVET: PRIVacy metric based on Extreme value Theory, Antoine Szatkownik [et
al.]
Generative models for inferring the evolutionary history of the malaria vector
Anopheles gambiae, Amelia Eneli [et al.]
Language Models Outperform Supervised-Only Approaches for Conserved Ele-
ment Comprehension, Eyes Robson [et al.]
Identification and Classification of Orphan Genes, Spurious Orphan Genes, and
Conserved Genes from the human microbiome, Chen Chen
Neural Simulation-based inference of demography and selection, Francisco De
Borja Campuzano Jiménez [et al.]
Species Identification and aDNA Read Mapping Using k-mer Embeddings, Filip
Thor [et al.]
Contrastive Learning for Population Structure and Trait Prediction, Filip Thor [et
al.]
Protein and genomic language models chart a vast landscape of antiphage de-
fenses, Mordret Ernest
The Phylogenomics and Sparse Learning of Trait Innovations, Gaurav Diwan [et
al.]](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:7x5c6ifrcznmg4mzhfuc2a6r/bafkreig4akadduemzbit67bv7jnr7x2ircwiriykabg2imuf3phy6hhube@jpeg)
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
cemess_vienna
@cemess.bsky.social
· Sep 10
We are hiring: Full Professor of Environmental Biogeochemistry of Metals
Human activities are driving rapid environmental change on a global scale, with pollutants playing a critical role in pushing planetary systems beyond safe limits. These changes have profound conseque...
edge.univie.ac.at
Reposted by Sophie Abby
Reposted by Sophie Abby
Reposted by Sophie Abby
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Nancy Moran
@nancy-moran.bsky.social
· May 29
Reposted by Sophie Abby
Sean Eddy
@cryptogenomicon.bsky.social
· May 22