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Help us tackle antimicrobial resistance (AMR) 🦠
Brought to you by the ‪@modmedmicro.bsky.social‬ team from @ox.ac.uk‬ where we are trying to fight AMR through public outreach!
Visit our blog bashthebug.net
🔬 New blog post!

Infections after joint replacement are serious, and identifying the bacteria quickly is crucial for patient care. We explain our research into metagenomic sequencing—reading all DNA in a sample to identify bacteria without needing lab growth.

👉 tinyurl.com/mrh8ukha

#AMR #Genomics
December 18, 2025 at 3:27 PM
Reposted by Bash the bug
Our paper is out in Microbial Genomics! 🧬

We evaluate gnomonicus, an open-source AMR prediction tool, using 2,663 Mycobacterium tuberculosis genomes—showing how WGS can deliver faster, scalable TB resistance predictions.

Read the full paper here🔗 bit.ly/4iZepd1

#TB #AMR #Genomics
Characterizing the performance of an antibiotic resistance prediction tool, gnomonicus, using a diverse test set of 2,663 Mycobacterium tuberculosis samples
Tuberculosis remains a global health problem. Making it easier and quicker to identify which antibiotics an infection is likely to be susceptible to will be a key part of the solution. Whilst whole-ge...
bit.ly
December 17, 2025 at 3:31 PM
Diagnosing infected replacement hip or knee joints

When patients suffer infections related to replaced knee or hip joints, medical teams need to know which bacteria are causing the problem. A promising new method called metagenomic sequencing reads all the DNA in a sample and can identify bacteria…
Diagnosing infected replacement hip or knee joints
When patients suffer infections related to replaced knee or hip joints, medical teams need to know which bacteria are causing the problem. A promising new method called metagenomic sequencing reads all the DNA in a sample and can identify bacteria without needing them to grow in the lab. This could be faster than standard tests, and might give more complete information.
bashthebug.net
December 17, 2025 at 2:08 PM
Plant sale for Oxford Hospitals Charity

Last week the MMM Unit held a plant sale to raise some money for Oxford Hospitals Charity. The work had started some weeks before with lots of propagation of spider plants and sourcing of paper coffee pots (so we didn't have to buy any plastic pots). The…
Plant sale for Oxford Hospitals Charity
Last week the MMM Unit held a plant sale to raise some money for Oxford Hospitals Charity. The work had started some weeks before with lots of propagation of spider plants and sourcing of paper coffee pots (so we didn't have to buy any plastic pots). The stall was staffed all day -- by Katie Hopkins and Valentina Pennetta in the photo -- and a grand total of £212 was raised. It's the first year we've run an event like this and the team are already looking forward to next year!
bashthebug.net
December 1, 2025 at 12:57 PM
Our team wore blue for World Antimicrobial Awareness Week 2025💙

Research into how resistance emerges, spreads and can be prevented is vital. Our group works to understand these processes and develop better tools to detect, monitor and combat antimicrobial resistance.

#WAAW @oxfordbrc.bsky.social
November 20, 2025 at 3:14 PM
Dr Bernadette Young talking about Fluoroquinolones

You can listen to our very own Dr Bernadette Young talking about fluoroquinolones -- these are a very valuable and widely-used class of antibiotics -- on Episode 32 of the Communicable podcast. This prestigious podcast is published by the European…
Dr Bernadette Young talking about Fluoroquinolones
You can listen to our very own Dr Bernadette Young talking about fluoroquinolones -- these are a very valuable and widely-used class of antibiotics -- on Episode 32 of the Communicable podcast. This prestigious podcast is published by the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) and hence is aimed at clinicians so will be technical and detailed, you have been warned!
bashthebug.net
November 19, 2025 at 1:17 PM
Why is antimicrobial awareness important?

Antimicrobial resistant infections are rising. In the next 25 years an estimated 39.1 million people globally will die from infections with antimicrobial resistance.

So what can you do to help? Something as simple as finishing your course of antibiotics!
November 19, 2025 at 12:44 PM
Antimicrobial resistance occurs when bacteria, viruses, fungi & parasites change over time - leading to medicines being less effective against them.
Here you see bacteria growing and antibiotics (the small discs) which kill the bacteria...unless they are resistant!
#WAAW #AMR @oxfordbrc.bsky.social
November 18, 2025 at 2:36 PM
Reposted by Bash the bug
Are you interested in infections, the micro-organisms that cause them and antimicrobial resistance? So are @bashthebug.net and they're looking for new members to join their patient & public group. More info: bashthebug.net/lay-represen... Deadline 27 Nov @ouhospitals.bsky.social @medsci.ox.ac.uk
Bash The Bug (@BashTheBug) / X
Bash The Bug (@BashTheBug) / X
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November 11, 2025 at 4:32 PM
Reposted by Bash the bug
🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team!

my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
October 15, 2025 at 10:58 AM
Reposted by Bash the bug
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
DPhil project themes
www.ndm.ox.ac.uk
October 8, 2025 at 7:11 PM
Read about the work we’re doing to make our research more sustainable

Dot Nagy, one of our DPhil students, has written a great blog post about how she and others have got the rest of us in the Unit thinking more about how to reduce the environmental impact of our research.
Read about the work we’re doing to make our research more sustainable
Dot Nagy, one of our DPhil students, has written a great blog post about how she and others have got the rest of us in the Unit thinking more about how to reduce the environmental impact of our research.
bashthebug.net
October 3, 2025 at 2:48 PM
From Pipettes to Pipelines: Greening a Multidisciplinary Research Lab.

@dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda.

#GreenLab #SustainableScience
From Pipettes to Pipelines — Oxford Climate Society
Dorottya Nagy writes about the experiences from the Modernising Medical Microbiology (MMM) Unit research group on engaging wet lab, computer lab, and office teams on the sustainability agenda.
oxfordclimatesociety.com
September 30, 2025 at 4:45 PM
Freezer Challenge!

We have to keep most of our biological samples at -80°C which is much colder than the -20°C you'll find (hopefully) inside your freezer in the kitchen. This does require a lot of electricity. Valentina put in an application to the Freezer Challenge and we came 19th out of 115…
Freezer Challenge!
We have to keep most of our biological samples at -80°C which is much colder than the -20°C you'll find (hopefully) inside your freezer in the kitchen. This does require a lot of electricity. Valentina put in an application to the Freezer Challenge and we came 19th out of 115 teams and won a Recognition Award! By increasing the temperature slightly on our freezers we estimate we will save 48kWh each day which is enough to boil an astonishing 436 litres of water.
bashthebug.net
September 29, 2025 at 3:54 PM
Read what our work experience got up to with a blog post written on their final day! From gram staining to agar art 🦠

bashthebug.net/2025/07/11/w...

#Microbiology #WorkExperience #YoungScientists
Work experience: what have we been up to?
Throughout the past three days doing work experience at MMM we’ve learnt about the different roles within the department, their responsibilities and contributions to research. After being briefed a…
bashthebug.net
August 28, 2025 at 10:41 AM
'Linking life expectancy to the bacteria in our gut: A final year undergraduate project'.

Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population.

Read the blog post here ➡️ bashthebug.net/2025/08/22/l...
August 22, 2025 at 2:27 PM
Green Impact Silver Award!

This year, our group has achieved Silver in the Green Impact award - a sustainability scheme which supports teams who want to improve their sustainability efforts. As part of the scheme, you are given a toolkit with lots of different activities to complete which…
Green Impact Silver Award!
This year, our group has achieved Silver in the Green Impact award - a sustainability scheme which supports teams who want to improve their sustainability efforts. As part of the scheme, you are given a toolkit with lots of different activities to complete which encourages people to think more about their environmental impact. Each task is assigned a point value, and you need to collect a specific number of points to achieve Bronze, Silver, Gold and Beyond Gold.
bashthebug.net
July 8, 2025 at 10:29 AM
Who should own data about you?

We ran a session at the Philosophy in Pubs Oxford group in April 2024, discussing where the moral lines can and should be drawn around the use of data about us. Who does the data really belong to? What are legitimate uses of it? What are the factors that make people…
Who should own data about you?
We ran a session at the Philosophy in Pubs Oxford group in April 2024, discussing where the moral lines can and should be drawn around the use of data about us. Who does the data really belong to? What are legitimate uses of it? What are the factors that make people uncomfortable? And are they justified? We had a very interesting discussion with around 16 people from the local Oxfordshire area, covering questions such as “Does the idea of the public good ever outweigh an individual's right to control how their data is used?”, “Is it correct that any data that is “about” us also "belongs" to us, even if we did not create it, nor have any use for it ourselves?”, and “Does it change things if the data is completely anonymised or is there still a general rule about self determination that applies?”
bashthebug.net
July 2, 2025 at 1:18 PM
MMM at the Westgate Shopping Centre.. again

This is the third year that the NIHR Oxford Biomedical Research Centre (BRC) held its Showcase at the popular Westgate Shopping Centre in the centre of Oxford. Like last year it was held jointly with the NIHR Oxford Health BRC. Our research software…
MMM at the Westgate Shopping Centre.. again
This is the third year that the NIHR Oxford Biomedical Research Centre (BRC) held its Showcase at the popular Westgate Shopping Centre in the centre of Oxford. Like last year it was held jointly with the NIHR Oxford Health BRC. Our research software engineers had redesigned and rewritten our dance mat game so now you took on the role of a doctor firing different coloured antibiotics at incoming bacteria.
bashthebug.net
June 2, 2025 at 11:49 AM
Looping out bacteria (well couscous) is harder than it looks!

@oxfordbrc.bsky.social @modmedmicro.bsky.social
May 29, 2025 at 12:47 PM
Come and play our dance mat game named after me! Outside John Lewis in the Westgate as part of the @oxfordbrc.bsky.social showcase!
May 29, 2025 at 12:23 PM
Come and find @modmedmicro.bsky.social at the Westgate in Oxford as part of the @oxfordbrc.bsky.social showcase!
May 29, 2025 at 12:08 PM
Reposted by Bash the bug
1/2 Our 🌟Modernising Medical Microbiology and Big Infection Diagnostics team🌟 is working on improving how we deal with infections in healthcare oxfordbrc.nihr.ac.uk/research-the...

@nihr.bsky.social @ox.ac.uk @ndm.ox.ac.uk @medsci.ox.ac.uk @modmedmicro.bsky.social @bashthebug.net
March 12, 2025 at 2:13 PM
Join us this half term at Westgate, Oxford to find out how our scientists are working to improve your health!

📅 29 May 2025
⌚ 10:00am – 3:30pm
📍 Westgate Oxford, Leiden Square (OX1 1PE)

🔗 oxfordbrc.nihr.ac.uk/brc-event/heal…

@modmedmicro.bsky.soci
al

#ScienceOnTheHighStreetet
May 27, 2025 at 11:30 AM