Beth Osia
@bethosia.bsky.social
Scientist interested DNA repair, genome instability, and repeat motif expansions/contractions in cancer, neuromuscular disease and beyond.
Reposted by Beth Osia
ish is a grep-like CLI tool that uses optimal alignment instead of exact matching.
It’s record-type aware, supporting line, FASTA, and FASTQ records.
Built in Mojo as a proof of concept for bioinformatics.
🧵1/5
It’s record-type aware, supporting line, FASTA, and FASTQ records.
Built in Mojo as a proof of concept for bioinformatics.
🧵1/5
Ish: SIMD and GPU Accelerated Local and Semi-Global Alignment as a CLI Filtering Tool https://www.biorxiv.org/content/10.1101/2025.06.04.657890v1
June 9, 2025 at 1:05 PM
ish is a grep-like CLI tool that uses optimal alignment instead of exact matching.
It’s record-type aware, supporting line, FASTA, and FASTQ records.
Built in Mojo as a proof of concept for bioinformatics.
🧵1/5
It’s record-type aware, supporting line, FASTA, and FASTQ records.
Built in Mojo as a proof of concept for bioinformatics.
🧵1/5
Reposted by Beth Osia
Check out our review on DNA end resection! With Raphael Ceccaldi, www.nature.com/articles/s41...
March 25, 2025 at 4:00 PM
Check out our review on DNA end resection! With Raphael Ceccaldi, www.nature.com/articles/s41...
Reposted by Beth Osia
How are chromosome breaks repaired and how is their repair influenced and facilitated by nuclear and genome dynamics? Fantastic initiative and collaboration with @karimmekhail.bsky.social, @chiololab.bsky.social, and @lablegube.bsky.social. @natrevmcb.bsky.social Link to article: rdcu.be/edViW
Nuclear and genome dynamics underlying DNA double-strand break repair
Nature Reviews Molecular Cell Biology - Changes in nuclear and genome organization promote the repair of DNA double-strand breaks and genome stability. Processes that are involved include the...
rdcu.be
March 18, 2025 at 4:32 PM
How are chromosome breaks repaired and how is their repair influenced and facilitated by nuclear and genome dynamics? Fantastic initiative and collaboration with @karimmekhail.bsky.social, @chiololab.bsky.social, and @lablegube.bsky.social. @natrevmcb.bsky.social Link to article: rdcu.be/edViW
Reposted by Beth Osia
Pardon my language but ... FUCK YEAH:
openRxiv Launch to Sustain and Expand Preprint Sharing in Life and Health Sciences prn.to/3R1f6VQ
openRxiv Launch to Sustain and Expand Preprint Sharing in Life and Health Sciences prn.to/3R1f6VQ
openRxiv Launch to Sustain and Expand Preprint Sharing in Life and Health Sciences
/PRNewswire/ -- openRxiv has officially launched as an independent nonprofit to oversee bioRxiv and medRxiv, the world's leading preprint servers for life and...
prn.to
March 11, 2025 at 9:38 PM
Pardon my language but ... FUCK YEAH:
openRxiv Launch to Sustain and Expand Preprint Sharing in Life and Health Sciences prn.to/3R1f6VQ
openRxiv Launch to Sustain and Expand Preprint Sharing in Life and Health Sciences prn.to/3R1f6VQ
Reposted by Beth Osia
What an amazing discovery from Scott Kennedy's lab! A new splicing system that recognizes transposons and removes them from mRNAs! t.co/3p3wyxkYXX
https://www.biorxiv.org/content/10.1101/2025.02.14.638102v1?ct=
t.co
February 18, 2025 at 2:51 PM
What an amazing discovery from Scott Kennedy's lab! A new splicing system that recognizes transposons and removes them from mRNAs! t.co/3p3wyxkYXX
As my academic and industry connections on the website formerly known as twitter are migrating, I’ve decided to do the same. Hello new world! Glad to be here 🧬
November 13, 2024 at 6:51 PM
As my academic and industry connections on the website formerly known as twitter are migrating, I’ve decided to do the same. Hello new world! Glad to be here 🧬