Bgee database
@bgee.org
Bgee is a database at SIB and UNIL to retrieve and compare gene expression patterns in multiple animal species.
bgee.org
bgee.org
Reposted by Bgee database
🧬 US genomics expert Paul Thomas joins SIB as Swiss-Prot co-director, with @alanbridge.bsky.social
🔍 Leader in gene function research; among the world’s most-cited scientists
📊 His arrival strengthens SIB’s role in generating trustworthy, AI-ready biological knowledge #UniProt #GeneOntology
More 👇
🔍 Leader in gene function research; among the world’s most-cited scientists
📊 His arrival strengthens SIB’s role in generating trustworthy, AI-ready biological knowledge #UniProt #GeneOntology
More 👇
US genomics pioneer Paul Thomas joins SIB as Swiss-Prot co-director
Paul Thomas joins Alan Bridge in leading SIB’s largest group, based in Geneva. As a pioneer in computational biology for genomics, principal investigator of a globally important resource on gene...
www.sib.swiss
September 15, 2025 at 11:43 AM
🧬 US genomics expert Paul Thomas joins SIB as Swiss-Prot co-director, with @alanbridge.bsky.social
🔍 Leader in gene function research; among the world’s most-cited scientists
📊 His arrival strengthens SIB’s role in generating trustworthy, AI-ready biological knowledge #UniProt #GeneOntology
More 👇
🔍 Leader in gene function research; among the world’s most-cited scientists
📊 His arrival strengthens SIB’s role in generating trustworthy, AI-ready biological knowledge #UniProt #GeneOntology
More 👇
Unlike other rhodopsins, fly Rh7 is expressed in many non-retinal neurons. This recent preprint shows why, and Bgee shows where 🤓 🪰
www.bgee.org/search/expre...
www.biorxiv.org/content/10.1... @pingkalai.bsky.social @v-kirsch.bsky.social
www.bgee.org/search/expre...
www.biorxiv.org/content/10.1... @pingkalai.bsky.social @v-kirsch.bsky.social
September 17, 2025 at 3:00 PM
Unlike other rhodopsins, fly Rh7 is expressed in many non-retinal neurons. This recent preprint shows why, and Bgee shows where 🤓 🪰
www.bgee.org/search/expre...
www.biorxiv.org/content/10.1... @pingkalai.bsky.social @v-kirsch.bsky.social
www.bgee.org/search/expre...
www.biorxiv.org/content/10.1... @pingkalai.bsky.social @v-kirsch.bsky.social
We are back online! Thank you to all teams @unil.bsky.social for their help in securing our infrastructure. @sib.swiss @dee-unil.bsky.social @marcrr.bsky.social
Following water dammage in the building which hosts our servers, electricity had to be turned off. Thus Bgee and all other databases from the @marcrr.bsky.social group are offline. We apologize for the inconvenience, and are working to bring them back online. @sib.swiss @dee-unil.bsky.social
September 15, 2025 at 9:09 AM
We are back online! Thank you to all teams @unil.bsky.social for their help in securing our infrastructure. @sib.swiss @dee-unil.bsky.social @marcrr.bsky.social
Following water dammage in the building which hosts our servers, electricity had to be turned off. Thus Bgee and all other databases from the @marcrr.bsky.social group are offline. We apologize for the inconvenience, and are working to bring them back online. @sib.swiss @dee-unil.bsky.social
September 14, 2025 at 7:54 AM
Following water dammage in the building which hosts our servers, electricity had to be turned off. Thus Bgee and all other databases from the @marcrr.bsky.social group are offline. We apologize for the inconvenience, and are working to bring them back online. @sib.swiss @dee-unil.bsky.social
We have improved the situation with the website and thank you for your patience. We are continuing to make changes to prevent this from happening in the future.
August 27, 2025 at 11:15 AM
We have improved the situation with the website and thank you for your patience. We are continuing to make changes to prevent this from happening in the future.
The Bgee website has been experiencing some issues, thank you for your patience while we work to solve them.
August 19, 2025 at 12:50 PM
The Bgee website has been experiencing some issues, thank you for your patience while we work to solve them.
Reposted by Bgee database
Very nice preprint on the importance of #FAIR data resources in the life sciences, for AI and generally for science, by a great @sib.swiss team led by @dessimoz.bsky.social. With @bgee.org inside ;)
zenodo.org/records/1572...
zenodo.org/records/1572...
The missing link in FAIR data policy: data resources
zenodo.org
July 4, 2025 at 10:54 AM
Very nice preprint on the importance of #FAIR data resources in the life sciences, for AI and generally for science, by a great @sib.swiss team led by @dessimoz.bsky.social. With @bgee.org inside ;)
zenodo.org/records/1572...
zenodo.org/records/1572...
Reposted by Bgee database
Registration is open for our @sib.swiss course Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions! Orthologs, paralogs, non model animal genomes, comparison of gene expression and of function, and more!
www.sib.swiss/training/cou...
www.sib.swiss/training/cou...
Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions
Overview The aims of this biodiversity bioinformatics course are to (i) explore key evolutionary concepts, (ii) examine different methodological appro
www.sib.swiss
June 4, 2025 at 10:35 AM
Registration is open for our @sib.swiss course Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions! Orthologs, paralogs, non model animal genomes, comparison of gene expression and of function, and more!
www.sib.swiss/training/cou...
www.sib.swiss/training/cou...
Reposted by Bgee database
📣 ELIXIR has published a position paper on the importance of #OpenData infrastructure for 🌍 European competitiveness in life sciences.
Read the news 👉 https://loom.ly/22XW72k
#ResearchInfrastructure #Science4EU
Read the news 👉 https://loom.ly/22XW72k
#ResearchInfrastructure #Science4EU
June 24, 2025 at 9:01 AM
📣 ELIXIR has published a position paper on the importance of #OpenData infrastructure for 🌍 European competitiveness in life sciences.
Read the news 👉 https://loom.ly/22XW72k
#ResearchInfrastructure #Science4EU
Read the news 👉 https://loom.ly/22XW72k
#ResearchInfrastructure #Science4EU
The SIB course "Gene expression made useful easily: tools and database of Bgee" is now available. I you want hands-on experience with Bgee check out our tutorial "The Bgee suite: leveraging standardized and comparable transcriptomics data across animals" at #BC2. buff.ly/IQc9uGD buff.ly/BI5jySb
May 22, 2025 at 11:55 AM
The SIB course "Gene expression made useful easily: tools and database of Bgee" is now available. I you want hands-on experience with Bgee check out our tutorial "The Bgee suite: leveraging standardized and comparable transcriptomics data across animals" at #BC2. buff.ly/IQc9uGD buff.ly/BI5jySb
The programme for the #bc2basel tutorials & workshops is out! Including our tutorial T10 - The Bgee suite: leveraging standardized and comparable transcriptomics data across animals. bc2.ch/tutorials-wo... bsky.app/profile/sib.... @sib.swiss @marcrr.bsky.social
Tutorials & workshops
The [BC]2 Basel Computational Biology Conference is Switzerland's main event in the domain of Computational Biology and one of the major events of its kind in Europe. The conference unites scientists…
bc2.ch
April 17, 2025 at 1:08 PM
The programme for the #bc2basel tutorials & workshops is out! Including our tutorial T10 - The Bgee suite: leveraging standardized and comparable transcriptomics data across animals. bc2.ch/tutorials-wo... bsky.app/profile/sib.... @sib.swiss @marcrr.bsky.social
We are excited to release our gene expression heatmap visualization tool. Add genes and identify which organs or cell types the genes are highly or lowly expressed in. Try it out here: www.bgee.org/search/expre...
@sib.swiss @marcrr.bsky.social
@sib.swiss @marcrr.bsky.social
April 15, 2025 at 9:10 AM
We are excited to release our gene expression heatmap visualization tool. Add genes and identify which organs or cell types the genes are highly or lowly expressed in. Try it out here: www.bgee.org/search/expre...
@sib.swiss @marcrr.bsky.social
@sib.swiss @marcrr.bsky.social
We had a great time at our workshop on FAIRification of single-cell RNA-Seq data and sharing the goals of #scFAIR at #biocuration2025 @biocurator.bsky.social
April 7, 2025 at 4:29 PM
We had a great time at our workshop on FAIRification of single-cell RNA-Seq data and sharing the goals of #scFAIR at #biocuration2025 @biocurator.bsky.social
Reposted by Bgee database
@bgee.org was used to design stem-cell based vaccines 💉against cancer in mouse models, opening a door to potential application with humans.
🔎 This is an example of the impact that bioinformatics databases and tools developed by SIB groups have.
👉 www.sib.swiss/services/ope...
#SIBResourceImpacts
🔎 This is an example of the impact that bioinformatics databases and tools developed by SIB groups have.
👉 www.sib.swiss/services/ope...
#SIBResourceImpacts
April 3, 2025 at 7:44 AM
@bgee.org was used to design stem-cell based vaccines 💉against cancer in mouse models, opening a door to potential application with humans.
🔎 This is an example of the impact that bioinformatics databases and tools developed by SIB groups have.
👉 www.sib.swiss/services/ope...
#SIBResourceImpacts
🔎 This is an example of the impact that bioinformatics databases and tools developed by SIB groups have.
👉 www.sib.swiss/services/ope...
#SIBResourceImpacts
Reposted by Bgee database
This looks great. I plan to use Bgee open data to further annotate genomic on the fly. I'm already using Wikidata and Uniprot. All this sounds exciting. :)
February 19, 2025 at 3:01 PM
This looks great. I plan to use Bgee open data to further annotate genomic on the fly. I'm already using Wikidata and Uniprot. All this sounds exciting. :)
Bgee has been featured this week by the Global Biodata Coalition! Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species.
Read more here: www.linkedin.com/pulse/bgee-g...
Read more here: www.linkedin.com/pulse/bgee-g...
Bgee
What kind of data does this resource provide? Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species. It provides an intuitive answer to the questio...
www.linkedin.com
February 10, 2025 at 1:59 PM
Bgee has been featured this week by the Global Biodata Coalition! Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species.
Read more here: www.linkedin.com/pulse/bgee-g...
Read more here: www.linkedin.com/pulse/bgee-g...
Reposted by Bgee database
The SIB Swiss Institute of #Bioinformatics is on Bluesky! We’re a non-profit organization dedicated to biological & biomedical #dataScience, supporting research & innovation. Follow us for updates on personalized health, biodiversity, pathogens, open science and more. Visit us at sib.swiss
SIB Swiss Institute of Bioinformatics | Data scientists for life
As a leading organization in biological and biomedical data science, SIB maximizes scientific impact through FAIR data, biodata resources, and innovation.
sib.swiss
February 4, 2025 at 7:33 AM
The SIB Swiss Institute of #Bioinformatics is on Bluesky! We’re a non-profit organization dedicated to biological & biomedical #dataScience, supporting research & innovation. Follow us for updates on personalized health, biodiversity, pathogens, open science and more. Visit us at sib.swiss
Reposted by Bgee database
ZFIN is now on Bluesky!
February 3, 2025 at 11:00 PM
ZFIN is now on Bluesky!
SWAT4HCLS 2024 conference proceedings are published, including this paper from Rangel et al which shows how Bgee's open data and integration with Wikidata can be used to train LLMs for complex queries. https://ceur-ws.org/Vol-3890/paper-4.pdf @marcrr.bsky.social @swat4hcls.bsky.social
SPARQL Generation: an analysis on fine-tuningOpenLLaMA for Question Answering over a LifeScience Knowledge Graph
buff.ly
January 8, 2025 at 1:30 PM
SWAT4HCLS 2024 conference proceedings are published, including this paper from Rangel et al which shows how Bgee's open data and integration with Wikidata can be used to train LLMs for complex queries. https://ceur-ws.org/Vol-3890/paper-4.pdf @marcrr.bsky.social @swat4hcls.bsky.social
The SIB course “Gene expression made useful easily: tools and database of Bgee” is now available. This course covers the curated gene expression data in Bgee, how to detect active genes from RNA-Seq, and the various tools available to access Bgee gene expression data. https://buff.ly/4j3Zhus
Bgee Course 2024: Gene Expression made Useful Easily: Tools and Database of Bgee
The 2024 course on Bgee: a curated database of gene expression in animals, including model species such as human, mouse, and drosophila, and others such as l...
buff.ly
January 7, 2025 at 3:30 PM
The SIB course “Gene expression made useful easily: tools and database of Bgee” is now available. This course covers the curated gene expression data in Bgee, how to detect active genes from RNA-Seq, and the various tools available to access Bgee gene expression data. https://buff.ly/4j3Zhus
Bgee in 2024! Single-cell integrated with bulk RNAseq and other technologies, 52 species, and new programmatic and web access.
https://buff.ly/3BzV9Bn
@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social
https://buff.ly/3BzV9Bn
@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social
Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools
Bgee (https://www.bgee.org/) is a database to retrieve and compare gene expression patterns in multiple animal species
buff.ly
December 11, 2024 at 1:50 PM
Bgee in 2024! Single-cell integrated with bulk RNAseq and other technologies, 52 species, and new programmatic and web access.
https://buff.ly/3BzV9Bn
@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social
https://buff.ly/3BzV9Bn
@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social
It's great when PubPeer allows dialogue with researchers to improve single-cell annotation 😀
https://buff.ly/3BsVrKe
@pubpeer.com @biocurator.bsky.social @marcrr.bsky.social @SIB.mstdn.science.ap.brid.gy
https://buff.ly/3BsVrKe
@pubpeer.com @biocurator.bsky.social @marcrr.bsky.social @SIB.mstdn.science.ap.brid.gy
PubPeer - Single-Cell Analyses Offer Insights into the Different Remod...
There are comments on PubPeer for publication: Single-Cell Analyses Offer Insights into the Different Remodeling Programs of Arteries and Veins (2024)
buff.ly
December 6, 2024 at 1:19 PM
It's great when PubPeer allows dialogue with researchers to improve single-cell annotation 😀
https://buff.ly/3BsVrKe
@pubpeer.com @biocurator.bsky.social @marcrr.bsky.social @SIB.mstdn.science.ap.brid.gy
https://buff.ly/3BsVrKe
@pubpeer.com @biocurator.bsky.social @marcrr.bsky.social @SIB.mstdn.science.ap.brid.gy
Reposted by Bgee database
There's a lot of new people here. Welcome! So I'm reposting our starter pack.
go.bsky.app/Npxsd7h
go.bsky.app/Npxsd7h
November 14, 2024 at 6:24 PM
There's a lot of new people here. Welcome! So I'm reposting our starter pack.
go.bsky.app/Npxsd7h
go.bsky.app/Npxsd7h