Bin Zhang
@binzmit.bsky.social
Associate Professor at MIT Chemistry; Enthusiastic about chromatin, biophysics, molecular dynamics, and AI.
We welcome 1st-year graduate student Chenxi Ye to join the group!
November 15, 2025 at 3:44 PM
We welcome 1st-year graduate student Chenxi Ye to join the group!
Our preprint on a single-bead-per-nucleotide DNA model is live! This model reproduces both atomistic simulations and persistent length for a variety of sequences. It's compatible with openMM, allowing for highly efficient GPU simulations.
www.biorxiv.org/content/10.1....
www.biorxiv.org/content/10.1....
NEAT-DNA: A Chemically Accurate, Sequence-Dependent Coarse-Grained Model for Large-Scale DNA Simulations
DNA's physical properties play a central role in genome organization and regulation, but simulating its behavior across biologically relevant scales remains a major computational challenge. Coarse gra...
www.biorxiv.org
November 9, 2025 at 12:26 PM
Our preprint on a single-bead-per-nucleotide DNA model is live! This model reproduces both atomistic simulations and persistent length for a variety of sequences. It's compatible with openMM, allowing for highly efficient GPU simulations.
www.biorxiv.org/content/10.1....
www.biorxiv.org/content/10.1....
First post on bluesky.
November 9, 2025 at 12:10 PM
First post on bluesky.