BrainGlobe
@brainglobe.info
We build open source computational neuroanatomy software that works across species.
https://brainglobe.info
Posts by @adamltyson.com
https://brainglobe.info
Posts by @adamltyson.com
Reposted by BrainGlobe
Working with rats, & not happy w MRI based brain atlases from adult males? We've got you! High resolution (2photon), 3D atlases (female rats) are now available in @brainglobe.info. Plz start using these atlases & let us know your feedback for the official release!
brainglobe.info/blog/swc-fem...
🐭🧠
brainglobe.info/blog/swc-fem...
🐭🧠
February 3, 2026 at 9:14 AM
Working with rats, & not happy w MRI based brain atlases from adult males? We've got you! High resolution (2photon), 3D atlases (female rats) are now available in @brainglobe.info. Plz start using these atlases & let us know your feedback for the official release!
brainglobe.info/blog/swc-fem...
🐭🧠
brainglobe.info/blog/swc-fem...
🐭🧠
New blogpost outlining our work with @athenaakrami.bsky.social at @sainsburywellcome.bsky.social to build light-microscopy based atlases of the rat brain.
brainglobe.info/blog/swc-fem...
brainglobe.info/blog/swc-fem...
February 2, 2026 at 4:59 PM
New blogpost outlining our work with @athenaakrami.bsky.social at @sainsburywellcome.bsky.social to build light-microscopy based atlases of the rat brain.
brainglobe.info/blog/swc-fem...
brainglobe.info/blog/swc-fem...
Reposted by BrainGlobe
Applications to our summer school have been extended for two weeks!
If you want to learn about open-source tools for neuroscience, please join us in London this August.
Deadline Feb 15th.
Full details: neuroinformatics.dev/open-softwar...
If you want to learn about open-source tools for neuroscience, please join us in London this August.
Deadline Feb 15th.
Full details: neuroinformatics.dev/open-softwar...
January 29, 2026 at 1:54 PM
Applications to our summer school have been extended for two weeks!
If you want to learn about open-source tools for neuroscience, please join us in London this August.
Deadline Feb 15th.
Full details: neuroinformatics.dev/open-softwar...
If you want to learn about open-source tools for neuroscience, please join us in London this August.
Deadline Feb 15th.
Full details: neuroinformatics.dev/open-softwar...
Reposted by BrainGlobe
One week left to apply for this summer school. Deadline Jan 31st.
Any questions, let me know.
neuroinformatics.dev/open-softwar...
Any questions, let me know.
neuroinformatics.dev/open-softwar...
January 22, 2026 at 10:13 AM
One week left to apply for this summer school. Deadline Jan 31st.
Any questions, let me know.
neuroinformatics.dev/open-softwar...
Any questions, let me know.
neuroinformatics.dev/open-softwar...
Still time to apply to learn about BrainGlobe at the Neuroinformatics Unit Open Software Summer School this August in London.
neuroinformatics.dev/open-softwar...
neuroinformatics.dev/open-softwar...
January 13, 2026 at 10:11 AM
Still time to apply to learn about BrainGlobe at the Neuroinformatics Unit Open Software Summer School this August in London.
neuroinformatics.dev/open-softwar...
neuroinformatics.dev/open-softwar...
Reposted by BrainGlobe
Three weeks left to apply for the Neuroinformatics Unit Open Software Summer School, August 17-28 2026 in London, UK!
Bringing together researchers and open source developers of ephys, behaviour and image analysis tools.
neuroinformatics.dev/open-softwar...
Deadline January 31st. Apply now!
Bringing together researchers and open source developers of ephys, behaviour and image analysis tools.
neuroinformatics.dev/open-softwar...
Deadline January 31st. Apply now!
January 9, 2026 at 4:10 PM
Three weeks left to apply for the Neuroinformatics Unit Open Software Summer School, August 17-28 2026 in London, UK!
Bringing together researchers and open source developers of ephys, behaviour and image analysis tools.
neuroinformatics.dev/open-softwar...
Deadline January 31st. Apply now!
Bringing together researchers and open source developers of ephys, behaviour and image analysis tools.
neuroinformatics.dev/open-softwar...
Deadline January 31st. Apply now!
Please join us in London August 24-28 2026 for a week long BrainGlobe course.
We will teach you how to use the tools and how to contribute back to the wider BrainGlobe ecosystem.
Apply now!
neuroinformatics.dev/open-softwar...
We will teach you how to use the tools and how to contribute back to the wider BrainGlobe ecosystem.
Apply now!
neuroinformatics.dev/open-softwar...
December 1, 2025 at 9:01 AM
Please join us in London August 24-28 2026 for a week long BrainGlobe course.
We will teach you how to use the tools and how to contribute back to the wider BrainGlobe ecosystem.
Apply now!
neuroinformatics.dev/open-softwar...
We will teach you how to use the tools and how to contribute back to the wider BrainGlobe ecosystem.
Apply now!
neuroinformatics.dev/open-softwar...
Reposted by BrainGlobe
Applications are open for the second Neuroinformatics Unit Open Software Summer School, August 17-28 2025 in London, UK!
Bringing together researchers and developers of open-source software for training and collaboration. Financial support available.
neuroinformatics.dev/open-softwar...
Bringing together researchers and developers of open-source software for training and collaboration. Financial support available.
neuroinformatics.dev/open-softwar...
December 1, 2025 at 8:57 AM
Applications are open for the second Neuroinformatics Unit Open Software Summer School, August 17-28 2025 in London, UK!
Bringing together researchers and developers of open-source software for training and collaboration. Financial support available.
neuroinformatics.dev/open-softwar...
Bringing together researchers and developers of open-source software for training and collaboration. Financial support available.
neuroinformatics.dev/open-softwar...
Reposted by BrainGlobe
Fantastic to see Igor Tatarnikov, Senior Research Software Engineer at SWC, collecting the 2025 International Prize from
@theneuro.bsky.social Irv and Helga Cooper Foundation on behalf of the @brainglobe.info Initiative!
#OpenScience
Read more: sainsburywellcome.org/web/research...
@theneuro.bsky.social Irv and Helga Cooper Foundation on behalf of the @brainglobe.info Initiative!
#OpenScience
Read more: sainsburywellcome.org/web/research...
November 11, 2025 at 3:48 PM
Fantastic to see Igor Tatarnikov, Senior Research Software Engineer at SWC, collecting the 2025 International Prize from
@theneuro.bsky.social Irv and Helga Cooper Foundation on behalf of the @brainglobe.info Initiative!
#OpenScience
Read more: sainsburywellcome.org/web/research...
@theneuro.bsky.social Irv and Helga Cooper Foundation on behalf of the @brainglobe.info Initiative!
#OpenScience
Read more: sainsburywellcome.org/web/research...
Hear BrainGlobe core developer speak about the project in this keynote lecture.
16:00 EST
16:00 EST
Ready to see how open-source tools are revolutionizing neuroscience?
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
November 10, 2025 at 10:03 AM
Hear BrainGlobe core developer speak about the project in this keynote lecture.
16:00 EST
16:00 EST
Reposted by BrainGlobe
Ready to see how open-source tools are revolutionizing neuroscience?
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
November 4, 2025 at 2:05 PM
Ready to see how open-source tools are revolutionizing neuroscience?
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
Join us for Igor Tatarnikov’s talk on The BrainGlobe Initiative, the open-source platform reshaping computational neuroanatomy.
Be part of the future of #OpenScience: buff.ly/p6l83E4
@ucl.ac.uk @sainsburywellcome.bsky.social
A new MRI mouse brain atlas has been added to BrainGlobe!
This atlas from Dorr et al. (2008) is an average of 40 T2-weighted MR images at 32um resolution.
Thanks to Saarah Hussain for adding this atlas.
More details: brainglobe.info/blog/dorr-mo...
Original paper: doi.org/10.1016/j.ne...
This atlas from Dorr et al. (2008) is an average of 40 T2-weighted MR images at 32um resolution.
Thanks to Saarah Hussain for adding this atlas.
More details: brainglobe.info/blog/dorr-mo...
Original paper: doi.org/10.1016/j.ne...
November 6, 2025 at 4:36 PM
A new MRI mouse brain atlas has been added to BrainGlobe!
This atlas from Dorr et al. (2008) is an average of 40 T2-weighted MR images at 32um resolution.
Thanks to Saarah Hussain for adding this atlas.
More details: brainglobe.info/blog/dorr-mo...
Original paper: doi.org/10.1016/j.ne...
This atlas from Dorr et al. (2008) is an average of 40 T2-weighted MR images at 32um resolution.
Thanks to Saarah Hussain for adding this atlas.
More details: brainglobe.info/blog/dorr-mo...
Original paper: doi.org/10.1016/j.ne...
Reposted by BrainGlobe
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
October 31, 2025 at 3:25 PM
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
Register to hear core developer Igor speak about BrainGlobe tools and the community that has been built around them.
Join us at The Neuro’s Open Science Prizes Ceremony for a special lecture by Igor Tatarnikov, Senior Research Software Engineer at the Sainsbury Wellcome Centre, University College London.
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
October 29, 2025 at 1:46 PM
Register to hear core developer Igor speak about BrainGlobe tools and the community that has been built around them.
Reposted by BrainGlobe
Join us at The Neuro’s Open Science Prizes Ceremony for a special lecture by Igor Tatarnikov, Senior Research Software Engineer at the Sainsbury Wellcome Centre, University College London.
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
October 29, 2025 at 11:45 AM
Join us at The Neuro’s Open Science Prizes Ceremony for a special lecture by Igor Tatarnikov, Senior Research Software Engineer at the Sainsbury Wellcome Centre, University College London.
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
🔗 Come be part of the future of open science. buff.ly/p6l83E4
#Neuroscience #Neuroanatomy #OpenScience
BrainGlobe branches out!
New blog outlining our collaborative work with @giuliapaci.bsky.social from @lmcb-ucl.bsky.social to build anatomical atlases for developmental mechanobiology.
brainglobe.info/blog/drosoph...
New blog outlining our collaborative work with @giuliapaci.bsky.social from @lmcb-ucl.bsky.social to build anatomical atlases for developmental mechanobiology.
brainglobe.info/blog/drosoph...
October 10, 2025 at 10:40 AM
BrainGlobe branches out!
New blog outlining our collaborative work with @giuliapaci.bsky.social from @lmcb-ucl.bsky.social to build anatomical atlases for developmental mechanobiology.
brainglobe.info/blog/drosoph...
New blog outlining our collaborative work with @giuliapaci.bsky.social from @lmcb-ucl.bsky.social to build anatomical atlases for developmental mechanobiology.
brainglobe.info/blog/drosoph...
Reposted by BrainGlobe
Huge congratulations to the @BrainGlobe.info team for winning the 2025 International Prize awarded by the @theneuro.bsky.social and Helga Cooper Foundation Open Science Prizes Selection Committee 🎉
www.sainsburywellcome.org/web/research...
www.sainsburywellcome.org/web/research...
October 9, 2025 at 2:11 PM
Huge congratulations to the @BrainGlobe.info team for winning the 2025 International Prize awarded by the @theneuro.bsky.social and Helga Cooper Foundation Open Science Prizes Selection Committee 🎉
www.sainsburywellcome.org/web/research...
www.sainsburywellcome.org/web/research...
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
🏆Announcing the laureates of the Neuro - Irv and Helga Cooper Foundation Open Science Prizes 2025!
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
The Neuro – Irv and Helga Cooper Foundation Open Science Prizes: Meet the winners of an exceptional edition
This year’s edition of the Irv and Helga Cooper Foundation Open Science Prizes at The Neuro, organised by the Tanenbaum Open Science Institute, was exceptional in every way. With a record number of ap...
www.mcgill.ca
October 9, 2025 at 7:06 AM
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
Reposted by BrainGlobe
🏆Announcing the laureates of the Neuro - Irv and Helga Cooper Foundation Open Science Prizes 2025!
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
The Neuro – Irv and Helga Cooper Foundation Open Science Prizes: Meet the winners of an exceptional edition
This year’s edition of the Irv and Helga Cooper Foundation Open Science Prizes at The Neuro, organised by the Tanenbaum Open Science Institute, was exceptional in every way. With a record number of ap...
www.mcgill.ca
October 8, 2025 at 7:29 PM
🏆Announcing the laureates of the Neuro - Irv and Helga Cooper Foundation Open Science Prizes 2025!
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
Reposted by BrainGlobe
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Meeting schedule
We hold regular meetings, the timings of which are available on our public calendar. If you are using napari or interested in how napari could be used in your work, please join one of our regular comm...
napari.org
October 6, 2025 at 3:57 AM
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Reposted by BrainGlobe
Lovely talk by Open Software Week participant @ishratz25.bsky.social on the challenges of using @brainglobe.info tools to identify very small regions, in very large images.
Check out the PyCon Au talk from my team member: @ishratz25.bsky.social on the challenges and solutions(?) of cell counting in whole-brain light sheet images! Also give her a follow, she's new here.
www.youtube.com/watch?v=ccLn...
www.youtube.com/watch?v=ccLn...
"Big Brains, Small Targets: Whole-Brain Image Analysis with Python" - Ishrat Zaman (PyCon AU 2025)
YouTube video by PyCon AU
www.youtube.com
September 17, 2025 at 9:00 AM
Lovely talk by Open Software Week participant @ishratz25.bsky.social on the challenges of using @brainglobe.info tools to identify very small regions, in very large images.
DeMBA (Developmental Mouse Brain Atlas) has now been added to BrainGlobe!
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
September 15, 2025 at 2:40 PM
DeMBA (Developmental Mouse Brain Atlas) has now been added to BrainGlobe!
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
This includes every developmental stage from P4 to P56. Each of these 53 atlases includes MRI, LSFM and STPT templates.
For more details, see the blog:
brainglobe.info/blog/DeMBA
Paper:
doi.org/10.1038/s414...
Reposted by BrainGlobe
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...
September 15, 2025 at 1:36 PM
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...
Have you built any software using a BrainGlobe package? We would love to feature your tool on our "Software built by the community" page.
Get in touch, we would love to hear about your work!
brainglobe.info/community/ex...
Get in touch, we would love to hear about your work!
brainglobe.info/community/ex...
Software built by the community — BrainGlobe
brainglobe.info
September 15, 2025 at 10:50 AM
Have you built any software using a BrainGlobe package? We would love to feature your tool on our "Software built by the community" page.
Get in touch, we would love to hear about your work!
brainglobe.info/community/ex...
Get in touch, we would love to hear about your work!
brainglobe.info/community/ex...
Version 2 of the "Enhanced and Unified Mouse Brain Atlas" has now been added to BrainGlobe. This popular atlas has been updated with corrected annotations and an isotropic 20um reference volume.
Thanks to Pavel Vychyk for adding this atlas!
brainglobe.info/blog/kim-iso...
Thanks to Pavel Vychyk for adding this atlas!
brainglobe.info/blog/kim-iso...
September 12, 2025 at 10:07 AM
Version 2 of the "Enhanced and Unified Mouse Brain Atlas" has now been added to BrainGlobe. This popular atlas has been updated with corrected annotations and an isotropic 20um reference volume.
Thanks to Pavel Vychyk for adding this atlas!
brainglobe.info/blog/kim-iso...
Thanks to Pavel Vychyk for adding this atlas!
brainglobe.info/blog/kim-iso...