Cooty McCootFace
@cootymccootface.bsky.social
Gain of Function: Coot and Moorhen updates.
Coot Release 1.1.16
o FEATURE: Local B-factor display
o FEATURE: Built-in logging (started) - view it by clicking the "Log" button
o FEATURE: Anisotropic probability radius scaling
o CHANGE: Boron atoms are now pinky-beige (like Jmol)
#coot
o FEATURE: Local B-factor display
o FEATURE: Built-in logging (started) - view it by clicking the "Log" button
o FEATURE: Anisotropic probability radius scaling
o CHANGE: Boron atoms are now pinky-beige (like Jmol)
#coot
June 5, 2025 at 9:11 AM
Coot Release 1.1.16
o FEATURE: Local B-factor display
o FEATURE: Built-in logging (started) - view it by clicking the "Log" button
o FEATURE: Anisotropic probability radius scaling
o CHANGE: Boron atoms are now pinky-beige (like Jmol)
#coot
o FEATURE: Local B-factor display
o FEATURE: Built-in logging (started) - view it by clicking the "Log" button
o FEATURE: Anisotropic probability radius scaling
o CHANGE: Boron atoms are now pinky-beige (like Jmol)
#coot
Coot 1.1.15 Released
Coot is 21 today!
- Drag and Drop added (drop target)
- Vertex gradients for map normals (smoother maps)
- Fixed atoms are now draggable!
- Fix and Unfix atoms now fixed!
- Select Map dialog fixed
- Merge Molecules dialog fixed
- Trackpad zooming fixed
Coot is 21 today!
- Drag and Drop added (drop target)
- Vertex gradients for map normals (smoother maps)
- Fixed atoms are now draggable!
- Fix and Unfix atoms now fixed!
- Select Map dialog fixed
- Merge Molecules dialog fixed
- Trackpad zooming fixed
April 1, 2025 at 4:27 AM
Coot 1.1.15 Released
Coot is 21 today!
- Drag and Drop added (drop target)
- Vertex gradients for map normals (smoother maps)
- Fixed atoms are now draggable!
- Fix and Unfix atoms now fixed!
- Select Map dialog fixed
- Merge Molecules dialog fixed
- Trackpad zooming fixed
Coot is 21 today!
- Drag and Drop added (drop target)
- Vertex gradients for map normals (smoother maps)
- Fixed atoms are now draggable!
- Fix and Unfix atoms now fixed!
- Select Map dialog fixed
- Merge Molecules dialog fixed
- Trackpad zooming fixed
Coot 1.1.14 has been released!
Coming to homebrew and flatpak soon!
- Clark & Labute comes to Coot 1, Moorhen & chapi!
(svg, 2D ligand environment view)
- Solid Symmetry (symmetry that you can see!)
- PAE plot for AlphaFold models
#coot
#molmatinf
Coming to homebrew and flatpak soon!
- Clark & Labute comes to Coot 1, Moorhen & chapi!
(svg, 2D ligand environment view)
- Solid Symmetry (symmetry that you can see!)
- PAE plot for AlphaFold models
#coot
#molmatinf
March 17, 2025 at 7:48 PM
Coot 1.1.14 has been released!
Coming to homebrew and flatpak soon!
- Clark & Labute comes to Coot 1, Moorhen & chapi!
(svg, 2D ligand environment view)
- Solid Symmetry (symmetry that you can see!)
- PAE plot for AlphaFold models
#coot
#molmatinf
Coming to homebrew and flatpak soon!
- Clark & Labute comes to Coot 1, Moorhen & chapi!
(svg, 2D ligand environment view)
- Solid Symmetry (symmetry that you can see!)
- PAE plot for AlphaFold models
#coot
#molmatinf
Human PINK1 at a TOM-VDADC array
Structure of the Week/Month/Year(?)! 9eih.
Sylvia Callegari...David Komander, Science 13 March 2025.
#coot Fancy mode
Copyright/license-free - i.e. freely reproducible.
Coot 1.1.14 coming soon!
Structure of the Week/Month/Year(?)! 9eih.
Sylvia Callegari...David Komander, Science 13 March 2025.
#coot Fancy mode
Copyright/license-free - i.e. freely reproducible.
Coot 1.1.14 coming soon!
March 15, 2025 at 1:08 AM
Human PINK1 at a TOM-VDADC array
Structure of the Week/Month/Year(?)! 9eih.
Sylvia Callegari...David Komander, Science 13 March 2025.
#coot Fancy mode
Copyright/license-free - i.e. freely reproducible.
Coot 1.1.14 coming soon!
Structure of the Week/Month/Year(?)! 9eih.
Sylvia Callegari...David Komander, Science 13 March 2025.
#coot Fancy mode
Copyright/license-free - i.e. freely reproducible.
Coot 1.1.14 coming soon!
Solid-modelled symmetry atoms, so that you can see symmetry on macOS.
Before and after
Coot 1.1.14 coming soon!
# coot
Before and after
Coot 1.1.14 coming soon!
# coot
March 14, 2025 at 8:01 AM
Solid-modelled symmetry atoms, so that you can see symmetry on macOS.
Before and after
Coot 1.1.14 coming soon!
# coot
Before and after
Coot 1.1.14 coming soon!
# coot
March 8, 2025 at 7:24 PM
March 2, 2025 at 2:44 AM
After years of (off and on) effort, Coot 1 finally compiles and runs on Alma Linux!
February 20, 2025 at 3:52 AM
After years of (off and on) effort, Coot 1 finally compiles and runs on Alma Linux!
Coot 1.1.12 Released:
Graphics viewport scaling, Acedrg Link, HOLE and several fixes
pemsley.github.io/coot/blog/20...
Graphics viewport scaling, Acedrg Link, HOLE and several fixes
pemsley.github.io/coot/blog/20...
Release 1.1.12
Release 1.1.12 o source tar:
pemsley.github.io
February 12, 2025 at 9:26 AM
Coot 1.1.12 Released:
Graphics viewport scaling, Acedrg Link, HOLE and several fixes
pemsley.github.io/coot/blog/20...
Graphics viewport scaling, Acedrg Link, HOLE and several fixes
pemsley.github.io/coot/blog/20...
HOLE-y!
An implementation of Oliver Smart's HOLE now available in Coot 1
Linear Gramicidin D - 2y5m - behold the lipid phase!
Coot 1.1.12 out soon
#coot
An implementation of Oliver Smart's HOLE now available in Coot 1
Linear Gramicidin D - 2y5m - behold the lipid phase!
Coot 1.1.12 out soon
#coot
February 7, 2025 at 7:27 AM
HOLE-y!
An implementation of Oliver Smart's HOLE now available in Coot 1
Linear Gramicidin D - 2y5m - behold the lipid phase!
Coot 1.1.12 out soon
#coot
An implementation of Oliver Smart's HOLE now available in Coot 1
Linear Gramicidin D - 2y5m - behold the lipid phase!
Coot 1.1.12 out soon
#coot
February 5, 2025 at 8:34 PM
Moorhen Gallery has gone live!
Click on an image and Moorhen will download into your browser the data, model and session files to reproduce the figure - so you can see how it's made.
Get in touch with @lulu_catapano in the other place if you want to make a contribution to the gallery!
Click on an image and Moorhen will download into your browser the data, model and session files to reproduce the figure - so you can see how it's made.
Get in touch with @lulu_catapano in the other place if you want to make a contribution to the gallery!
February 1, 2025 at 4:21 AM
Moorhen Gallery has gone live!
Click on an image and Moorhen will download into your browser the data, model and session files to reproduce the figure - so you can see how it's made.
Get in touch with @lulu_catapano in the other place if you want to make a contribution to the gallery!
Click on an image and Moorhen will download into your browser the data, model and session files to reproduce the figure - so you can see how it's made.
Get in touch with @lulu_catapano in the other place if you want to make a contribution to the gallery!
Quiz Question!
The glutamic acid side-chain and the LLP ligand from 1ajs fit their density nicely but the contacts on the ligand are unhappy (almost thinking the interaction is a clash). What's going on?/Why is Coot unhappy?
The glutamic acid side-chain and the LLP ligand from 1ajs fit their density nicely but the contacts on the ligand are unhappy (almost thinking the interaction is a clash). What's going on?/Why is Coot unhappy?
January 26, 2025 at 2:06 AM
Quiz Question!
The glutamic acid side-chain and the LLP ligand from 1ajs fit their density nicely but the contacts on the ligand are unhappy (almost thinking the interaction is a clash). What's going on?/Why is Coot unhappy?
The glutamic acid side-chain and the LLP ligand from 1ajs fit their density nicely but the contacts on the ligand are unhappy (almost thinking the interaction is a clash). What's going on?/Why is Coot unhappy?
January 25, 2025 at 10:43 PM
Coot no longer turns your ligand into a molten globule when you use a dictionary with no restraints!
(thanks for the prompt, L.Masso)
Coot 1.1.12 out next week!
#coot
(thanks for the prompt, L.Masso)
Coot 1.1.12 out next week!
#coot
January 25, 2025 at 10:37 PM
Coot no longer turns your ligand into a molten globule when you use a dictionary with no restraints!
(thanks for the prompt, L.Masso)
Coot 1.1.12 out next week!
#coot
(thanks for the prompt, L.Masso)
Coot 1.1.12 out next week!
#coot
After looking at EM maps for months, the Holton "Untangle Challenge" map looks so pretty...
January 17, 2025 at 7:09 PM
After looking at EM maps for months, the Holton "Untangle Challenge" map looks so pretty...
A few slides from Lucrezia Catapano's recent CCP4 Study Weekend presentation - there will be a CCP4 YouTube video at some stage
January 16, 2025 at 1:34 AM
A few slides from Lucrezia Catapano's recent CCP4 Study Weekend presentation - there will be a CCP4 YouTube video at some stage
Lucrezia Catapano has a style all her own when giving a Coot presentation...
January 10, 2025 at 12:40 AM
Lucrezia Catapano has a style all her own when giving a Coot presentation...
Coot 1.1.11 Released
o FEATURE: One can now dynamically edit SMILES in layla
o FEATURE: Anisotropic atom representation
[thanks to Global Phasing]
o FEATURE: Electrostatic representation [Stuart McNicholas]
o FEATURE: Function partition_map_by_chain() added
and more.
#coot
o FEATURE: One can now dynamically edit SMILES in layla
o FEATURE: Anisotropic atom representation
[thanks to Global Phasing]
o FEATURE: Electrostatic representation [Stuart McNicholas]
o FEATURE: Function partition_map_by_chain() added
and more.
#coot
December 13, 2024 at 12:02 AM
Coot 1.1.11 Released
o FEATURE: One can now dynamically edit SMILES in layla
o FEATURE: Anisotropic atom representation
[thanks to Global Phasing]
o FEATURE: Electrostatic representation [Stuart McNicholas]
o FEATURE: Function partition_map_by_chain() added
and more.
#coot
o FEATURE: One can now dynamically edit SMILES in layla
o FEATURE: Anisotropic atom representation
[thanks to Global Phasing]
o FEATURE: Electrostatic representation [Stuart McNicholas]
o FEATURE: Function partition_map_by_chain() added
and more.
#coot
Anisotropic representation of COD cif files in Coot 1.1.11
December 12, 2024 at 4:33 AM
Anisotropic representation of COD cif files in Coot 1.1.11