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Ziqi DENG @dengziqi1991.bsky.social · Aug 21

Many thanks travel funds support from Conexión BCB of @csic.es to make it happen!

Ziqi DENG @dengziqi1991.bsky.social · Aug 21

It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social

Ziqi DENG @dengziqi1991.bsky.social · Aug 21

It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social

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Reposted by Ziqi DENG

Jake Barber @jakenbarber.bsky.social · Aug 19

For those at #ESEB2025 today please come along to my poster! Excited to talk about how powerful mutation bias can be in adaptation :)

@eseb2025.bsky.social @eseb.bsky.social

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Ziqi DENG @dengziqi1991.bsky.social · Aug 17

*correct poster session 17:00 - 19:00

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Ziqi DENG @dengziqi1991.bsky.social · Aug 17

I will present my work TreeProfiler in #eseb2025 @eseb2025.bsky.social at poster session on Thursday 19:00-21:00. Welcome to stop by at P03 315! :)

Jaime Huerta-Cepas @jhcepas.bsky.social · Jun 20

Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · Jun 25

The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by
Claudia Sanchis, part of her PhD thesis!
www.biorxiv.org/content/10.1...

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · Jun 20

Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes

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Ziqi DENG @dengziqi1991.bsky.social · Jun 19

Check with the latest features of TreeProfiler in github.com/compgenomics... and
github.com/dengzq1234/t.... Here is a small demo of profiling tree over 100k leaves with multipule columns of presence/absence matrix.

Ziqi DENG @dengziqi1991.bsky.social · Jun 19

We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees"
biorxiv.org/content/10.1...
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.

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Reposted by Ziqi DENG

Jaime Huerta-Cepas @jhcepas.bsky.social · Mar 6

Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.bsky.social

First time to cover new ETE4 features: Interactive viz of huge tree, profiling...

In Madrid, April 21-25. Travel fellowships available!

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