Ece Eksi, PhD
@eksiece.bsky.social
360 followers
180 following
14 posts
Assistant Professor in the Division of Oncological Sciences, OHSU. Spatial proteomics; prostate cancer; cancer neuroscience.
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Ece Eksi, PhD
@eksiece.bsky.social
· Sep 10
Ece Eksi, PhD
@eksiece.bsky.social
· Sep 10
Toward universal immunofluorescence normalization for multiplex tissue imaging with UniFORM
Wang et al. introduce UniFORM, a universal normalization pipeline for multiplex tissue
imaging. UniFORM applies automatic rigid landmark registration to align intensity
distributions at both the featu...
www.cell.com
Reposted by Ece Eksi, PhD
Ece Eksi, PhD
@eksiece.bsky.social
· Apr 24
Engineering neuronal networks in granular microgels to innervate bioprinted cancer organoids on-a-chip
Organoid models are invaluable for studying organ processes in vitro, offering an unprecedented ability to replicate organ function. Despite recent advancements that have increased their cellular comp...
pubs.rsc.org
Ece Eksi, PhD
@eksiece.bsky.social
· Jan 20
Sympathetic nerve signaling rewires the tumor microenvironment: a shift in “microenvironmental-ity” - Cancer and Metastasis Reviews
Nerve signaling within the tumor microenvironment (TME) plays a critical role in the initiation, progression, and metastasis of solid tumors. Due to their highly responsive behavior and activation upo...
link.springer.com
Ece Eksi, PhD
@eksiece.bsky.social
· Dec 19
Ece Eksi, PhD
@eksiece.bsky.social
· Dec 19
Ece Eksi, PhD
@eksiece.bsky.social
· Dec 19
Ece Eksi, PhD
@eksiece.bsky.social
· Dec 19
AxonFinder: Automated segmentation of tumor innervating neuronal fibers
Neurosignaling is increasingly recognized as a critical factor in cancer progression, where neuronal innervation of primary tumors contributes to the disease's advancement. This study focuses on segmenting individual axons within the prostate tumor microenvironment, which have been challenging to detect and analyze due to their irregular morphologies. We present a novel deep learning-based approach for the automated segmentation of axons, AxonFinder, leveraging a U-Net model with a ResNet-101 encoder, based on a multiplexed imaging approach.
www.cell.com
Reposted by Ece Eksi, PhD
Rong Fan
@rongfan8.bsky.social
· Dec 7
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
www.nature.com
Ece Eksi, PhD
@eksiece.bsky.social
· Nov 20
Ece Eksi, PhD
@eksiece.bsky.social
· Nov 20
Ece Eksi, PhD
@eksiece.bsky.social
· Nov 18