@fredriklanner.bsky.social
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Assistant Professor, Karolinska Institutet Human embryo | Embryonic stem cells | Cell therapies for AMD & Diabetes
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fredriklanner.bsky.social
Try our Early embryogenesis prediction tool. Hopefully it will be useful for the community to benchmark and explore embryo model data. I have found it very useful when reviewing manuscript with such datasets. Just upload and in a few minutes 😁

petropoulos-lanner-labs.clintec.ki.se
Petropoulos & Lanner Labs (Homepage)
petropoulos-lanner-labs.clintec.ki.se
fredriklanner.bsky.social
Happy to share our new paper as a first post on BlueSky. We have generated a gene reference tool spanning from zygote to gastrulation in the human embryo which can assist to automatically call lineage of query cells. Very useful tool in benchmarking stem cell models!

www.nature.com/articles/s41...
A comprehensive human embryo reference tool using single-cell RNA-sequencing data
Nature Methods - This resource integrates different human embryo datasets to create a transcriptional reference map of human embryonic development from zygote to gastrula.
www.nature.com