Genetics ML Papers
@geneticsmlpapers.bsky.social
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
January 12, 2026 at 2:06 PM
A generic pipeline for CADD score generation: chickenCADD and turkeyCADD https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf272/8321220
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
January 12, 2026 at 2:01 PM
Genomic prediction of feed efficiency in boars by deep learning https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf274/8323593
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
January 12, 2026 at 1:56 PM
Decoding the germline genetic architecture of prostate cancer at a single cell resolution https://journals.plos.org/plosgenetics/article
Novel estimation of memory in molecular dynamics with extended and comprehensive single-molecule tracking software: FreeTrace
https://www.biorxiv.org/content/10.64898/2026.01.08.698486v1
January 12, 2026 at 1:51 PM
Novel estimation of memory in molecular dynamics with extended and comprehensive single-molecule tracking software: FreeTrace
https://www.biorxiv.org/content/10.64898/2026.01.08.698486v1
Teddy: neural inference of epidemiological parameters from viral sequences
https://www.biorxiv.org/content/10.64898/2026.01.05.697728v1
January 12, 2026 at 1:46 PM
Teddy: neural inference of epidemiological parameters from viral sequences
https://www.biorxiv.org/content/10.64898/2026.01.05.697728v1
DNA sequence quantitatively encodes CTCF-binding affinity at genome scale
https://www.biorxiv.org/content/10.64898/2026.01.05.696797v1
January 12, 2026 at 1:40 PM
DNA sequence quantitatively encodes CTCF-binding affinity at genome scale
https://www.biorxiv.org/content/10.64898/2026.01.05.696797v1
A standardized atlas of human bronchoalveolar lavage cells built using scalable ensemble annotation and cross-study robust markers
https://www.biorxiv.org/content/10.64898/2026.01.08.698293v1
January 12, 2026 at 1:35 PM
A standardized atlas of human bronchoalveolar lavage cells built using scalable ensemble annotation and cross-study robust markers
https://www.biorxiv.org/content/10.64898/2026.01.08.698293v1
Context-aware Multi-Property Antibody Predictor: a Novel Framework Integrating Text and Protein Language Models
https://www.biorxiv.org/content/10.64898/2026.01.07.698270v1
January 12, 2026 at 1:30 PM
Context-aware Multi-Property Antibody Predictor: a Novel Framework Integrating Text and Protein Language Models
https://www.biorxiv.org/content/10.64898/2026.01.07.698270v1
Deep Learning-Driven Fragment Ion Selection for Improved Quantification in MS based Proteomics
https://www.biorxiv.org/content/10.64898/2026.01.08.698341v1
January 12, 2026 at 1:25 PM
Deep Learning-Driven Fragment Ion Selection for Improved Quantification in MS based Proteomics
https://www.biorxiv.org/content/10.64898/2026.01.08.698341v1
Efficient training of neural networks using natural vectors with covariates for the plant microRNA precursor prediction.
https://www.biorxiv.org/content/10.64898/2026.01.08.693543v1
January 12, 2026 at 1:20 PM
Efficient training of neural networks using natural vectors with covariates for the plant microRNA precursor prediction.
https://www.biorxiv.org/content/10.64898/2026.01.08.693543v1
Love-thy-neighbor: Neural networks for tracking and lineage tracing in budding yeast
https://www.biorxiv.org/content/10.64898/2026.01.09.698579v1
January 12, 2026 at 1:15 PM
Love-thy-neighbor: Neural networks for tracking and lineage tracing in budding yeast
https://www.biorxiv.org/content/10.64898/2026.01.09.698579v1
SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks
https://www.biorxiv.org/content/10.64898/2026.01.08.698474v1
January 12, 2026 at 1:10 PM
SegJointGene: joint cell segmentation and spatial gene prioritization by information entropy guided convolutional neural networks
https://www.biorxiv.org/content/10.64898/2026.01.08.698474v1
tRNA isodecoder analysis using Nanopore ionic current signals and deep learning
https://www.biorxiv.org/content/10.64898/2025.12.27.696718v1
January 5, 2026 at 2:41 PM
tRNA isodecoder analysis using Nanopore ionic current signals and deep learning
https://www.biorxiv.org/content/10.64898/2025.12.27.696718v1
Intrinsic DNA sequence determinants and tissue-specific regulation of human replication origins
https://www.biorxiv.org/content/10.64898/2025.12.28.696672v1
January 5, 2026 at 2:36 PM
Intrinsic DNA sequence determinants and tissue-specific regulation of human replication origins
https://www.biorxiv.org/content/10.64898/2025.12.28.696672v1
Earth-Observation and Environmental Vision Transformers Reveal Genome-Environment Associations in Macroalgae
https://www.biorxiv.org/content/10.64898/2025.12.30.696986v1
January 5, 2026 at 2:31 PM
Earth-Observation and Environmental Vision Transformers Reveal Genome-Environment Associations in Macroalgae
https://www.biorxiv.org/content/10.64898/2025.12.30.696986v1
Integrative multiomic analysis on single-nucleotide variants identifies candidate genes for human craniofacial malformation
https://www.biorxiv.org/content/10.64898/2025.12.29.696805v1
January 5, 2026 at 2:26 PM
Integrative multiomic analysis on single-nucleotide variants identifies candidate genes for human craniofacial malformation
https://www.biorxiv.org/content/10.64898/2025.12.29.696805v1
Deep learning analyses of DNA sequences resolve the retention of the Duffy-null resistance to Plasmodium vivax malaria in Africa
https://www.biorxiv.org/content/10.64898/2025.12.25.695976v1
January 5, 2026 at 2:21 PM
Deep learning analyses of DNA sequences resolve the retention of the Duffy-null resistance to Plasmodium vivax malaria in Africa
https://www.biorxiv.org/content/10.64898/2025.12.25.695976v1
Computational Discovery of CRISPR-Cas13b Guide RNAs for Broad-Spectrum Dengue Virus Targeting
https://www.biorxiv.org/content/10.64898/2025.12.31.697158v1
January 5, 2026 at 2:16 PM
Computational Discovery of CRISPR-Cas13b Guide RNAs for Broad-Spectrum Dengue Virus Targeting
https://www.biorxiv.org/content/10.64898/2025.12.31.697158v1
APIPred Web 1.0: A Web Platform to Predict Potential Aptamer Sequences for Protein targets
https://www.biorxiv.org/content/10.64898/2025.12.31.697194v1
January 5, 2026 at 2:11 PM
APIPred Web 1.0: A Web Platform to Predict Potential Aptamer Sequences for Protein targets
https://www.biorxiv.org/content/10.64898/2025.12.31.697194v1
ALLCatchR, a machine-learning classifier identifies now 20 T-ALL subtypes across cohorts and age groups
https://www.biorxiv.org/content/10.64898/2026.01.01.697268v1
January 5, 2026 at 2:06 PM
ALLCatchR, a machine-learning classifier identifies now 20 T-ALL subtypes across cohorts and age groups
https://www.biorxiv.org/content/10.64898/2026.01.01.697268v1
scDeepVariant: A population-informed deep learning framework for germline variant calling in scRNA-seq
https://www.biorxiv.org/content/10.64898/2025.12.31.696877v1
January 5, 2026 at 2:01 PM
scDeepVariant: A population-informed deep learning framework for germline variant calling in scRNA-seq
https://www.biorxiv.org/content/10.64898/2025.12.31.696877v1
Explainability methods from machine learning detect important drugs' atoms in drug-target interactions
https://www.biorxiv.org/content/10.64898/2026.01.02.697342v1
January 5, 2026 at 1:56 PM
Explainability methods from machine learning detect important drugs' atoms in drug-target interactions
https://www.biorxiv.org/content/10.64898/2026.01.02.697342v1
Integrative transcriptomic identification of cellular senescence beyond marker limitations
https://www.biorxiv.org/content/10.64898/2026.01.02.697374v1
January 5, 2026 at 1:51 PM
Integrative transcriptomic identification of cellular senescence beyond marker limitations
https://www.biorxiv.org/content/10.64898/2026.01.02.697374v1
MultiGS: A comprehensive and user-friendly genomic prediction platform Integrating statistical, machine learning, and deep learning models for breeders
https://www.biorxiv.org/content/10.64898/2026.01.02.697306v1
January 5, 2026 at 1:46 PM
MultiGS: A comprehensive and user-friendly genomic prediction platform Integrating statistical, machine learning, and deep learning models for breeders
https://www.biorxiv.org/content/10.64898/2026.01.02.697306v1
NetMedGPT - A network medicine foundation model for extensive disease mechanism mining and drug repurposing
https://www.biorxiv.org/content/10.64898/2026.01.04.697552v1
January 5, 2026 at 1:41 PM
NetMedGPT - A network medicine foundation model for extensive disease mechanism mining and drug repurposing
https://www.biorxiv.org/content/10.64898/2026.01.04.697552v1