Genetics ML Papers
@geneticsmlpapers.bsky.social
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
November 10, 2025 at 2:31 PM
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
November 10, 2025 at 2:26 PM
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
Generative Design of Cell Type-Specific RNA Splicing Elements for Programmable Gene Regulation
https://www.biorxiv.org/content/10.1101/2025.11.05.686847v1
November 10, 2025 at 2:21 PM
Generative Design of Cell Type-Specific RNA Splicing Elements for Programmable Gene Regulation
https://www.biorxiv.org/content/10.1101/2025.11.05.686847v1
Examining Selection Dynamics and Limitations in Multi-round Protein Selection of High Diversity Libraries
https://www.biorxiv.org/content/10.1101/2025.11.09.687419v1
November 10, 2025 at 2:16 PM
Examining Selection Dynamics and Limitations in Multi-round Protein Selection of High Diversity Libraries
https://www.biorxiv.org/content/10.1101/2025.11.09.687419v1
Nona: A unifying multimodal masking framework for functional genomics
https://www.biorxiv.org/content/10.1101/2025.11.06.687036v1
November 10, 2025 at 2:11 PM
Nona: A unifying multimodal masking framework for functional genomics
https://www.biorxiv.org/content/10.1101/2025.11.06.687036v1
AI-assisted Image-Based Phenotyping Reveals Genetic Architecture of Pod Traits in Mungbean (Vigna radiata L.)
https://www.biorxiv.org/content/10.1101/2025.11.06.687031v1
November 10, 2025 at 2:06 PM
AI-assisted Image-Based Phenotyping Reveals Genetic Architecture of Pod Traits in Mungbean (Vigna radiata L.)
https://www.biorxiv.org/content/10.1101/2025.11.06.687031v1
Challenges in predicting chromatin accessibility differences between species
https://www.biorxiv.org/content/10.1101/2025.11.09.687449v1
November 10, 2025 at 2:01 PM
Challenges in predicting chromatin accessibility differences between species
https://www.biorxiv.org/content/10.1101/2025.11.09.687449v1
Genomic Prediction and SNP Importance Analysis for Agronomic Traits in Two Coffea canephora Populations
https://www.biorxiv.org/content/10.1101/2025.10.31.685932v1
November 10, 2025 at 1:56 PM
Genomic Prediction and SNP Importance Analysis for Agronomic Traits in Two Coffea canephora Populations
https://www.biorxiv.org/content/10.1101/2025.10.31.685932v1
Bridging Language Markers and Pathology: Correlations Between Digital Speech Measures and Surrogate CSF Biomarkers in Alzheimer's Disease
https://www.biorxiv.org/content/10.1101/2025.11.05.686472v1
November 10, 2025 at 1:51 PM
Bridging Language Markers and Pathology: Correlations Between Digital Speech Measures and Surrogate CSF Biomarkers in Alzheimer's Disease
https://www.biorxiv.org/content/10.1101/2025.11.05.686472v1
Deep Learning Enables Automated Segmentation and Quantification of Ultrastructure from Transmission Electron Microscopy Images
https://www.biorxiv.org/content/10.1101/2025.11.05.686793v1
November 10, 2025 at 1:46 PM
Deep Learning Enables Automated Segmentation and Quantification of Ultrastructure from Transmission Electron Microscopy Images
https://www.biorxiv.org/content/10.1101/2025.11.05.686793v1
Scalable and systematic hierarchical virus taxonomy with vConTACT3
https://www.biorxiv.org/content/10.1101/2025.11.06.686974v1
November 10, 2025 at 1:41 PM
Scalable and systematic hierarchical virus taxonomy with vConTACT3
https://www.biorxiv.org/content/10.1101/2025.11.06.686974v1
Deep Learning for RNA Secondary Structure Determination: Gauging Generalizability and Broadening the Scope of Traditional Methods
https://www.biorxiv.org/content/10.1101/2025.11.04.686644v1
November 10, 2025 at 1:36 PM
Deep Learning for RNA Secondary Structure Determination: Gauging Generalizability and Broadening the Scope of Traditional Methods
https://www.biorxiv.org/content/10.1101/2025.11.04.686644v1
Uncertainty-Aware Deep Learning for Multi-Metric and Dose-Specific Prediction of Drug Synergy
https://www.biorxiv.org/content/10.1101/2025.11.05.686895v1
November 10, 2025 at 1:31 PM
Uncertainty-Aware Deep Learning for Multi-Metric and Dose-Specific Prediction of Drug Synergy
https://www.biorxiv.org/content/10.1101/2025.11.05.686895v1
ECLIPSE: Exploration of Complex Ligand-Protein Interactions through Learning from Systems-level Heterogeneous Biomedical Knowledge Graphs
https://www.biorxiv.org/content/10.1101/2025.11.05.686382v1
November 10, 2025 at 1:26 PM
ECLIPSE: Exploration of Complex Ligand-Protein Interactions through Learning from Systems-level Heterogeneous Biomedical Knowledge Graphs
https://www.biorxiv.org/content/10.1101/2025.11.05.686382v1
GONNECT: A Gene Ontology-guided Neural Network for Explainable Cancer Typing
https://www.biorxiv.org/content/10.1101/2025.11.06.686983v1
November 10, 2025 at 1:21 PM
GONNECT: A Gene Ontology-guided Neural Network for Explainable Cancer Typing
https://www.biorxiv.org/content/10.1101/2025.11.06.686983v1
Multi-Dimensional Spatiotemporal Attention Neural Network for Next Generation Sequencing Basecalling
https://www.biorxiv.org/content/10.1101/2025.11.06.686985v1
November 10, 2025 at 1:16 PM
Multi-Dimensional Spatiotemporal Attention Neural Network for Next Generation Sequencing Basecalling
https://www.biorxiv.org/content/10.1101/2025.11.06.686985v1
HalluDesign: Protein Optimization and de novo Design via Iterative Structure Hallucination and Sequence design
https://www.biorxiv.org/content/10.1101/2025.11.08.686881v1
November 10, 2025 at 1:11 PM
HalluDesign: Protein Optimization and de novo Design via Iterative Structure Hallucination and Sequence design
https://www.biorxiv.org/content/10.1101/2025.11.08.686881v1
MLDAAPP: machine learning data acquisition for assessing population phenotypes https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571
November 3, 2025 at 2:37 PM
MLDAAPP: machine learning data acquisition for assessing population phenotypes https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
November 3, 2025 at 2:32 PM
Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452
MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf224/8254024
November 3, 2025 at 2:27 PM
MyESL: A Software for Evolutionary Sparse Learning in Molecular Phylogenetics and Genomics https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf224/8254024
Interpreting Supervised Machine Learning Inferences in Population Genomics Using Haplotype Matrix Permutations https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf250/8276164
November 3, 2025 at 2:22 PM
Interpreting Supervised Machine Learning Inferences in Population Genomics Using Haplotype Matrix Permutations https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf250/8276164
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
November 3, 2025 at 2:17 PM
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
Screening of Oyster Peptides for Anti-Muscle Atrophy Based on Machine Learning and Computer Simulation: Guided by Antioxidant Pathways
https://www.biorxiv.org/content/10.1101/2025.10.28.685008v1
November 3, 2025 at 2:12 PM
Screening of Oyster Peptides for Anti-Muscle Atrophy Based on Machine Learning and Computer Simulation: Guided by Antioxidant Pathways
https://www.biorxiv.org/content/10.1101/2025.10.28.685008v1
DCBK: A Fragment-Based Hybrid Simulation and Machine Learning Framework for Predicting Ligand Dissociation Kinetics
https://www.biorxiv.org/content/10.1101/2025.11.01.685950v1
November 3, 2025 at 2:07 PM
DCBK: A Fragment-Based Hybrid Simulation and Machine Learning Framework for Predicting Ligand Dissociation Kinetics
https://www.biorxiv.org/content/10.1101/2025.11.01.685950v1
Oyster: a neural network for modelling genomic sequences that enables exact position-specific k-mer contributions
https://www.biorxiv.org/content/10.1101/2025.11.01.686014v1
November 3, 2025 at 2:02 PM
Oyster: a neural network for modelling genomic sequences that enables exact position-specific k-mer contributions
https://www.biorxiv.org/content/10.1101/2025.11.01.686014v1