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HMMER

@hmmer.bsky.social

200 followers 130 following 86 posts

Biosequence analysis using profile hidden Markov Models. HMMER is managed by EMBL’s European Bioinformatics Institute (EMBL-EBI).

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HMMER @hmmer.bsky.social · Jul 11

📣 We’re pleased to announce the release of jackhmmer.
It’s now available for use, and we’d greatly value any feedback as we continue to improve the tool.

www.ebi.ac.uk/Tools/hmmer/...
Give it a try and share your thoughts!

#bioinformatics #hmmer

HMMER @hmmer.bsky.social · May 20

Thanks! We're actively working on bringing back the jackhmmer functionality. We'll definitely post an update here announcing it which should happen in the following months.

HMMER @hmmer.bsky.social · May 7

📣 We will be transitioning to a new website architecture on May 20, 2025.
We will not be running a parallel system, so you may have to make a few changes, especially if you are using the API.

HMMER @hmmer.bsky.social · Mar 31

Service will be interrupted tomorrow, Thursday 29th, 0700 - 1100 BST owing to planned infrastructure changes.

HMMER @hmmer.bsky.social · Mar 31

search services will be effected by this. https://x.com/emblebi/status/1091670896337698816

HMMER @hmmer.bsky.social · Mar 31

The August release of @hmm3r is out!
It now includes @ChEMBL as a searchable sequence database 🔎
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer?seqdb=chembl

HMMER @hmmer.bsky.social · Mar 31

Try the latest version of @hmm3r with the brand new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search
https://x.com/uniprot/status/1019592114932416512

HMMER @hmmer.bsky.social · Mar 31

Ever had too much data in your taxonomy tree?🌳 Try the new fisheye mode in the latest release of @hmm3r (“taxonomy” tab in your results) here https://www.ebi.ac.uk/Tools/hmmer/search/phmmer This visualisation uses this library https://github.com/ProteinsWebTeam/taxonomy-visualisation

HMMER @hmmer.bsky.social · Mar 31

Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/1010190457895374849

HMMER @hmmer.bsky.social · Mar 31

🚨 @hmm3r website availability at risk on Saturday 9th June 🚨
Due to important system maintenance at the @emblebi, the Hmmer Website might become unavailable for some time tomorrow afternoon (UK time). 🚧
Sorry for the inconvenience.

HMMER @hmmer.bsky.social · Mar 31

website now makes available @ensembl release 92 and @ensemblgenomes release 39. Try searching these databases now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

Try the latest version of @hmm3r with the new @uniprot data. You can submit your search here 🔎
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/999322111020814337

HMMER @hmmer.bsky.social · Mar 31

Are you experimenting with @BioSchemas? Have a look at the @hmm3r website. Pages are now annotated with structured data and result pages include current version of @BioSchemas annotations for protein, structures, and protein annotations.
https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

📢 With our newest release, you can now search the TreeFam database. Try it here https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan and select the “TreeFam” option. http://www.treefam.org/

HMMER @hmmer.bsky.social · Mar 31

You can try the latest version of @hmm3r with the new @uniprot data.
Give it a go at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer
https://x.com/uniprot/status/991241316561489921

HMMER @hmmer.bsky.social · Mar 31

The latest version of the @hmm3r website now contains the latest release of @ensemblgenomes, version 38. Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

This data release is already included in the new release of the @hmm3r website. Search @uniprot release 2018_01 at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer https://x.com/uniprot/status/958736502808285184

HMMER @hmmer.bsky.social · Mar 31

📢 New version of the @hmm3r website available with MEROPS database version 12.
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

📢 New version of the @hmm3r website available with the new 2017_11 release from @uniprot (see https://x.com/uniprot/status/933374715615379456 …)
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

📢 New version of the @hmm3r website available with @CATHDatabase Gene3D version 16.0
Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/hmmscan?hmmdb=gene3d

HMMER @hmmer.bsky.social · Mar 31

📢 New version of @hmm3r website available with the brand new 2017_10 release from @uniprot. Try it now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

And the data is already available in the new version of the @hmm3r website! Search the latest @uniprot data now at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer https://x.com/uniprot/status/913704907303243776

HMMER @hmmer.bsky.social · Mar 31

🔐 Remember that the switch is happening today, during the next hours. If your script starts failing please check the URL you are using. https://x.com/hmm3r/status/910134236434305027

HMMER @hmmer.bsky.social · Mar 31

📢 The new version of the @hmm3r website is out. It now includes @ensembl 90 and @ensemblgenomes 37. Try it at https://www.ebi.ac.uk/Tools/hmmer/search/phmmer

HMMER @hmmer.bsky.social · Mar 31

Some servers stopped overnight, causing searches to be unavailable this morning. Everything should be back to normal now, sorry about that.