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Jacques Dainat

@jacquesdainat.bsky.social

56 followers 62 following 6 posts

PhD Bioinformatics, Bioinformatician at @IRD_fr previously @Alcediag_Alcen and @NBISwe @scilifelab @uppsalauni, Annotation Assembly Epigenetic Pipeline Software Reproducibility https://github.com/Juke34

github.com

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Jacques Dainat @jacquesdainat.bsky.social · Mar 24

Glad to attend the @nf-co.re #Hackathon from Montpellier! Great collaboration, inspiring discussions, and lots of fun 🚀 #bioinformatics

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Jacques Dainat @jacquesdainat.bsky.social · Mar 15

My latest #Nextflow pipeline has just been published in JOSS 🎉

Journal of Open Source Software @joss-openjournals.bsky.social · Mar 15

Just published in JOSS: 'AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment' https://doi.org/10.21105/joss.07545

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Reposted by Jacques Dainat

Bioinfo-fr.net @bioinfofr.mamot.fr.ap.brid.gy · Feb 12

📰 Vous n'avez rien compris au changement de licence Anaconda ? 🐍 On vous explique pourquoi et comment se mettre en règle :
https://bioinfo-fr.net/conda-et-le-piege-de-la-licence-anaconda
#bioinfofr #anaconda #conda

Conda et le piège de la licence Anaconda - Bioinfo-fr.net

Conda est apparu en 2012 et a été distribué par Continuum Analytics, connue sous le nom d’Anaconda Inc depuis 2017. Conda est distribué sous la licence MIT, l’une des licences open-source les plus permissives, permettant aux utilisateurs d’adopter, d’adapter et de partager le logiciel presque sans restrictions. Conda a été conçu pour gérer les environnements […]

bioinfo-fr.net

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Reposted by Jacques Dainat

Ken Brewer @kenibrewer.bsky.social · Feb 4

Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!

nf-core @nf-co.re · Feb 3

Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉

Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸).

Registration is now open! 🎟

nf-co.re/events/2025/...

Hackathon - March 2025 (Online / Distributed)

A virtual hackathon with local sites to develop nf-core together

nf-co.re

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Reposted by Jacques Dainat

Darby Saxbe @darbysaxbe.bsky.social · Feb 4

🚨BREAKING. From a program officer at the National Science Foundation, a list of keywords that can cause a grant to be pulled. I will be sharing screenshots of these keywords along with a decision tree. Please share widely. This is a crisis for academic freedom & science.

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Reposted by Jacques Dainat

Marcin Kierczak @marcinki.bsky.social · Jan 20

Registration to our #rstats Summer School RaukR 2025 Beyond The Basics is open! Don't miss the opportunity to elevate your R skillset! #r #datascience #bioinformatics #NBISweden @scilifelab.se

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Jacques Dainat @jacquesdainat.bsky.social · Jan 21

I’m thrilled to join the first cohort of 2025 Nextflow Ambassadors! seqera.io/blog/welcome...
I'm still promoting #Nextflow and highlighting its incredible potential in #Bioinformatics, but with an Nextflow ambassador hat on now.It's good to be supported, thx @mribeirodantas.bsky.social @nextflow.io

Join us in welcoming the first cohort of 2025 Nextflow Ambassadors | Seqera

It's time to welcome the new ambassadors who joined the Nextflow Ambassador Program for the 2025.1 semester.

seqera.io

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Reposted by Jacques Dainat

Mahesh Binzer-Panchal @arcane-mahesh.bsky.social · Dec 10

NBIS is seeking a #Nextflow pipeline developer ( permanent position ) in Uppsala, Sweden. www.uu.se/en/about-uu/.... Come join us and don't forget to include your Github/Gitlab/developer profile.