Jalal Uddin
@jalal228.bsky.social
36 followers
63 following
5 posts
Postdoc at Yale University 🇺🇸
Ph.D., UiT 🇳🇴 Visiting Ph.D., UMC Utrecht 🇳🇱
M.Sc., Kangwon National University 🇰🇷
B.Sc., Microbiology, JU 🇧🇩 ❤️
Interested in studying gastrointestinal infections using chemical tools
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Reposted by Jalal Uddin
Matt Bogyo
@mbogyo.bsky.social
· Aug 29
A Two-Step Synthesis of Covalent Genetically-Encoded Libraries of Peptide-Derived Macrocycles (cGELs) enables use of electrophiles with diverse reactivity
Genetically-encoded libraries of peptide-derived macrocycles containing electrophile "warheads" (cGELs) can be used to identify potent and selective covalent ligands for protein targets. Such cGELs ar...
www.biorxiv.org
Jalal Uddin
@jalal228.bsky.social
· Aug 16
Large-scale CRISPR screening in primary human 3D gastric organoids enables comprehensive dissection of gene-drug interactions
Nature Communications - CRISPR-Cas9-based screens have allowed the study of gene-drug interactions. Here, the authors develop CRISPR-Cas9 knock-out, activation and repression screens in human...
rdcu.be
Reposted by Jalal Uddin
Jalal Uddin
@jalal228.bsky.social
· Jun 17
Activity-Based Protein Profiling of Serine Hydrolases in Bacteria: Methods and Protocols
Activity-based protein profiling (ABPP) is a chemoproteomic technique that uses functionalized covalent enzyme inhibitors known as activity-based probes (ABPs) to detect, quantify, and identify active...
doi.org
Reposted by Jalal Uddin
Matt Bogyo
@mbogyo.bsky.social
· May 30
Identification of covalent inhibitors of Staphylococcus aureus serine hydrolases important for virulence and biofilm formation - Nature Communications
Staphylococcus aureus is a leading cause of bacteria-associated mortality worldwide. New tools are needed to both image and treat this pathogen. We previously identified a group of S. aureus serine hy...
link.springer.com
Reposted by Jalal Uddin
Reposted by Jalal Uddin
Matt Bogyo
@mbogyo.bsky.social
· Jan 16
Identification of a secreted protease from Bacteroides fragilis that induces intestinal pain and inflammation by cleavage of PAR2
Protease-activated receptor 2 (PAR2) is a central regulator of intestinal barrier function, inflammation and pain. Upregulated intestinal proteolysis and PAR2-signaling are implicated in inflammatory ...
www.biorxiv.org
Jalal Uddin
@jalal228.bsky.social
· Feb 11
Mona Johannessen
@monaj66.bsky.social
· Feb 11
Activity-Based Protein Profiling Identifies an α-Amylase Family Protein Contributing to the Virulence of Methicillin-Resistant Staphylococcus aureus
In search of new putative antimicrobial drug targets in methicillin-resistant Staphylococcus aureus, we aimed to identify and characterize retaining glycosidase activities in this bacterial pathogen. Using activity-based protein profiling (ABPP), a panel of 7 fluorescent probes was screened to detect activities of diverse retaining glycosidase families. Based on this, a cocktail of 3 biotinylated probes (targeting α-glucosidases, β-galactosidases and α-fucosidases) was used for target enrichment and three glycoside hydrolase family proteins were identified by mass-spectrometry: 6-phospho-β-glucosidase (BglA), α-amylase family protein trehalase C (TreC), and autolysin (Atl). The physiological relevance of previously uncharacterized BglA and TreC was addressed in CRISPRi and inhibitor studies with the putative TreC inhibitor α-cyclophellitol-aziridine. Silencing of treC did not affect bacterial growth in rich media, but reduced biofilm formation in vitro, and attenuated virulence during Galleria mellonella infection, warranting future investigations into the biochemical function of this enzyme.
pubs.acs.org
Jalal Uddin
@jalal228.bsky.social
· Feb 11