Logan Thrasher Collins
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logantcollins.bsky.social
Logan Thrasher Collins
@logantcollins.bsky.social
Synthetic biologist, futurist, author. Biomedical engineering PhD candidate at WashU. Budding serial biotech entrepreneur. You can learn more about me on my website: https://logancollinsblog.com/
Pinned
In my recent bioRxiv preprint (www.biorxiv.org/content/10.1...) I show an entirely novel way of shielding AAVs from the neutralizing antibodies found in 30-60% of patients - encapsulating the virus inside of an immunologically invisible hollow protein compartment called vault.
A valuable paper examining the presence of AAV manufacturing contaminants in a human patient’s liver. These results will hopefully be leveraged for improving the safety of gene therapies in the future. www.nature.com/articles/s41...
Contaminating plasmid sequences and disrupted vector genomes in the liver following adeno-associated virus gene therapy - Nature Medicine
Analyses of liver biopsies from a child with spinal muscular atrophy treated with adeno-associated virus gene therapy who developed hepatitis reveal contaminating manufacturing plasmids and disrupted ...
www.nature.com
January 25, 2026 at 11:23 PM
I hope to at some point apply this knowledge towards gene therapy neurotech treatments for widespread mental illnesses. In the meantime, I hope you enjoy my writeup and the diagrams I made to illustrate it! logancollinsblog.com/2026/01/02/a...
Amygdala Structure, Function, and Clinically Relevant Pathways
PDF version: Amygdala Structure, Function, and Clinically Relevant Pathways – by Logan Thrasher Collins Anatomy The amygdala consists of nuclei which can be grouped into (i) the basolateral n…
logancollinsblog.com
January 3, 2026 at 12:32 AM
I have been exploring neural circuits of emotion in the brain lately, which led me to write this primer on the amygdala over the holidays!
Amygdala Structure, Function, and Clinically Relevant Pathways
This content is also available on my website: https://logancollinsblog.com/2026/01/02/amygdala-structure-function-and-clinically-relevant-pathways/
substack.com
January 3, 2026 at 12:32 AM
F. Scott Fitzgerald's life seems a turbulently intense, roller coaster ride of ups and downs. Though largely tragic, his story has a sort of colorful magnetism, embodying the wild human spirit that runs so strongly through his writings. Many lessons here.
en.wikipedia.org/wiki/F._Scot...
F. Scott Fitzgerald - Wikipedia
en.wikipedia.org
December 14, 2025 at 1:45 AM
Yaakub et al. demonstrate that transcranial ultrasound (TUS) in the nucleus accumbens (part of the reward system) alters human decision making for a probabilistic learning task. Participants were more likely to adopt a “win-stay” strategy when exposed to TUS. www.nature.com/articles/s41...
Non-invasive ultrasonic neuromodulation of the human nucleus accumbens impacts reward sensitivity - Nature Communications
This study shows that non-invasive ultrasound to the human nucleus accumbens can modulate deep brain activity and enhance reward-guided learning, offering a potential alternative to invasive neuromodu...
www.nature.com
December 5, 2025 at 10:22 PM
Karfusehr et al. created “Dipids”, DNA origami disks with slanted edges that can act as dynamic units for assembly of compartments the size of small cells. The Dipid design parameters can also be varied to achieve interesting emergent properties!
www.nature.com/articles/s41...
Self-assembled cell-scale containers made from DNA origami membranes - Nature Materials
Through the programmable self-assembly of lipid-inspired radially symmetric DNA, porous molecular membranes and cell-sized compartments are formed with applications in bottom-up biology and soft robot...
www.nature.com
December 3, 2025 at 9:49 PM
UNESCO has put out the "first global normative framework on the ethics of neurotechnology". Hopefully this will stimulate governments to adopt appropriate regulations which help exciting new neurotechnologies move forward without causing harm!
www.unesco.org/en/articles/...
Ethics of neurotechnology: UNESCO adopts the first global standard in
Today UNESCO’s Member States took the final step towards adopting the first global normative framework on the ethics of neurotechnology. The Recommendation, which will enter into force on November 12
www.unesco.org
December 2, 2025 at 12:23 AM
Cool paper on a light-activated (optogenetic) multimerizing intrabody system for targeted protein degradation via the ubiquitin-proteasome pathway. pubs.acs.org/doi/10.1021/...
FLASH-AWAY: Intrabody-Directed Targeting of Optogenetic Tools for Protein Degradation
Protein homeostasis, or proteostasis, is essential for cellular proteins to function properly. The buildup of abnormal proteins (such as damaged, misfolded, or aggregated proteins) is associated with ...
pubs.acs.org
November 30, 2025 at 11:01 PM
Highly informative analysis of the challenges facing the biotech industry, some proposed solutions and their failings, and why aging treatments may revitalize biotech business if they can be developed successfully. www.ladanuzhna.xyz/writing/tril...
Where are all the trillion dollar biotechs? — lada nuzhna
Of the many trends people chase in biotech, the only one that proves sure and consistent is declining returns. Even after adjusting for inflation, the number of new drugs approved per $1 billion of R&...
www.ladanuzhna.xyz
November 27, 2025 at 3:39 AM
A solid paper on using in situ sequencing to spatially measure base editing and prime editing in mice and macaques. Spatial differences across liver were surprisingly minimal. www.nature.com/articles/s41...
Spatial profiling of gene editing by in situ sequencing in mice and macaques - Nature Biomedical Engineering
Targeted in situ sequencing directly maps editing rates at single-cell resolution in postmortem tissues to visualize base and prime editor delivery.
www.nature.com
November 25, 2025 at 12:06 AM
An interesting article examining the resource and energy challenges facing those aiming to construct massive data centers. My hope is AI may drive more exploration of nuclear energy, though the article portrays the likelihood of this as fairly slim.
asteriskmag.com/issues/09/ca...
Can We Build a Five Gigawatt Data Center?—Asterisk
By 2030, leading AI labs will need data centers so massive they will require the power equivalent of some of America’s largest cities. Will they be able to find it?
asteriskmag.com
November 13, 2025 at 2:58 AM
My seventh installment of interesting research papers that I have read over the past few weeks and would like to share with my community. Substack link: substack.com/home/post/p-...
Roundup of Interesting Research Papers #7
My seventh installment of interesting research papers that I have read over the past few weeks and would like to share with my community.
substack.com
November 11, 2025 at 10:55 PM
I wrote this educational primer as a fun exploration of a topic not related to my current research. While such knowledge may be useful in the event of a future ebolavirus epidemic, it is mostly an exercise in curiosity and intellectual enrichment. loganthrashercollins.substack.com/p/an-introdu...
An Introduction to Ebolavirus Biology
Note: this content is also available on my website at https://logancollinsblog.com/2025/11/04/an-introduction-to-ebolavirus-biology/
loganthrashercollins.substack.com
November 5, 2025 at 1:32 AM
My sixth installment of interesting research papers that I have read over the past few weeks and would like to share with my community. loganthrashercollins.substack.com/p/roundup-of...
Roundup of Interesting Research Papers #6
My sixth installment of interesting research papers that I have read over the past few weeks and would like to share with my community.
loganthrashercollins.substack.com
October 23, 2025 at 9:43 PM
A nice primer article discussing the biology, structure, and dysfunction of the blood-brain-barrier. Quite useful for learning. #neurophysiology #biomedicine www.cell.com/current-biol...
The blood–brain barrier
Here, Audrey Chagnot and Axel Montagne discuss the structural and functional features of the blood–brain barrier and the association of its disruption with various pathologies.
www.cell.com
October 23, 2025 at 9:34 PM
Jung Soo Suk’s lab has developed nanoparticles consisting of DNA complexed with branched PEI and coated by PEG. Here, they show these nanoparticles diffuse widely into the mouse brain after intracranial injection as well as transduce neurons efficiently. pubs.acs.org/doi/10.1021/...
Bioreducible Gene Delivery Platform that Promotes Intracellular Payload Release and Widespread Brain Dispersion
We here introduce a novel bioreducible polymer-based gene delivery platform enabling widespread transgene expression in multiple brain regions with therapeutic relevance following intracranial convection-enhanced delivery. Our bioreducible nanoparticles provide markedly enhanced gene delivery efficacy in vitro and in vivo compared to nonbiodegradable nanoparticles primarily due to the ability to release gene payloads preferentially inside cells. Remarkably, our platform exhibits competitive gene delivery efficacy in a neuron-rich brain region compared to a viral vector under previous and current clinical investigations with demonstrated positive outcomes. Thus, our platform may serve as an attractive alternative for the intracranial gene therapy of neurological disorders.
pubs.acs.org
October 16, 2025 at 12:39 AM
As a significant aside, these synthetic capsids can also transport nucleic acids (e.g. mRNAs) through lipid membranes, so they have great promise for gene therapy too (in my view)!
October 9, 2025 at 10:32 PM
Remarkable paper where the authors design an antimicrobial peptide (AMP) triskelion which assembles into a capsid-like structure. On binding bacterial surfaces, the capsids fall apart, AMPs insert into the membrane, and pores form which kill the bacteria.
Antimicrobial peptide capsids of de novo design - Nature Communications
With the growing threat of antibiotic resistance, unconventional approaches to antimicrobial discovery are needed. Here, the authors present a peptide topology that mimics virus architecture and assembles into antimicrobial capsids that disrupt bacterial membranes upon contact.
www.nature.com
October 9, 2025 at 10:32 PM
I've greatly expanded my 'Notes on Ultrasound Physics and Instrumentation' to include detailed discussion of transducers, transducer arrays, and ultrasound pulse parameters in practice. Enjoy!
Substack version: substack.com/home/post/p-...
My Website version: logancollinsblog.com/2025/05/16/n...
Notes on Ultrasound Physics and Instrumentation
Note: this content is also available on my website at https://logancollinsblog.com/2025/05/16/notes-on-ultrasound-physics/
substack.com
October 9, 2025 at 1:05 AM
Fascinating paper wherein the authors collect multiomics data (genome, epigenome, transcriptome, metabolome, proteome, and microbiome) from a 116-year-old woman who lived to 117, uncovering insights about the biology of her exceptional longevity. A great read!

www.cell.com/cell-reports...
The multiomics blueprint of the individual with the most extreme lifespan
In brief, Santos-Pujol and colleagues characterize the multiomics landscape of the human with the most extreme longevity. The study enables the association of advantageous genetic variants, an engaged...
www.cell.com
October 7, 2025 at 10:05 PM
My fifth installment of interesting research papers that I have read over the past few weeks and would like to share with my community.
substack.com/home/post/p-...
Roundup of Interesting Research Papers #5
My fifth installment of interesting research papers that I have read over the past few weeks and would like to share with my community.
substack.com
September 28, 2025 at 11:13 PM
Cool paper wherein Kwak et al. inject into mice nanoparticles consisting of polymer-condensed plasmid DNA or mRNA coated in PEG and then leverage ultrasound-induced blood-brain-barrier opening to deliver the nucleic acids to desired brain regions.

pubs.acs.org/doi/10.1021/...
Brain Nucleic Acid Delivery and Genome Editing via Focused Ultrasound-Mediated Blood–Brain Barrier Opening and Long-Circulating Nanoparticles
We introduce a two-pronged strategy comprising focused ultrasound (FUS)-mediated blood–brain barrier (BBB) opening and long-circulating biodegradable nanoparticles (NPs) for systemic delivery of nucle...
pubs.acs.org
September 28, 2025 at 11:01 PM
Beyond mouse data, the study is supported by experiments on human biopsy samples as well as by human population data. All very impressive and has strong clinical potential. #alzheimersdisease #biochemistry
September 26, 2025 at 12:07 AM
A highly publicized paper providing solid evidence for the idea that lithium deficiency contributes centrally to Alzheimer's disease (AD) pathogenesis. Aron et al. also show in mice that lithium orotate supplementation might mitigate AD and brain aging. www.nature.com/articles/s41...
Lithium deficiency and the onset of Alzheimer’s disease - Nature
Lithium has an essential role in the brain and is deficient early in Alzheimer’s disease, which can be recapitulated in mice and treated with a novel lithium salt that restores the physiological level.
www.nature.com
September 26, 2025 at 12:07 AM