Lukas Malfertheiner
lukasmalf.bsky.social
Lukas Malfertheiner
@lukasmalf.bsky.social
PostDoc in the von Mering lab. Interested in microbial ecology, phages and bioinformatics.
www.microbeatlas.org
Pinned
Closely related microbes tend to live in similar communities across Earth’s environments.
We call this pattern community conservatism - extending established ecological patterns to the microbial world.
🧬🌍 #MicrobialEcology #Evolution

Read the full article here: doi.org/10.1038/s415...
Really cool study and an impressive dataset!
I am pleased to share that our paper is now published in Cell!
www.cell.com/cell/fulltex...
I am deeply grateful to all co-authors for making this possible.

This work was made possible through the guidance of Dr. Peer Bork. I share this in grateful memory and with deep respect for his mentorship.
February 10, 2026 at 9:29 AM
Reposted by Lukas Malfertheiner
FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social.
📄 www.science.org/doi/10.1126/...
🌐 search.foldseek.com/foldmason
💾 github.com/steineggerla...
Multiple protein structure alignment at scale with FoldMason
Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...
www.science.org
January 30, 2026 at 6:11 AM
In case you missed our recent study out in @natecoevo.nature.com - now with open access PDFs:

Related microbes globally share similar ecological communities, extending classical ecological patterns to the microbial realm 🦠🌎

Read more: www.nature.com/articles/s41...
Research Briefing: rdcu.be/e0K14
Community conservatism is widespread across microbial phyla and environments - Nature Ecology & Evolution
This study reveals that closely related microorganisms tend to inhabit similar communities across all major environments and phyla. The authors term this phenomenon ‘community conservatism’, extending...
www.nature.com
January 26, 2026 at 10:38 AM
Closely related microbes tend to live in similar communities across Earth’s environments.
We call this pattern community conservatism - extending established ecological patterns to the microbial world.
🧬🌍 #MicrobialEcology #Evolution

Read the full article here: doi.org/10.1038/s415...
January 16, 2026 at 10:17 AM
Reposted by Lukas Malfertheiner
Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil

#ISMEJournal by Senka Causevic et al from Jan Roelof van der Meer at @dmf-unil.bsky.social

academic.oup.com/ismej/advanc...
Habitat filtering more than microbiota origin controls microbiome transplant outcomes in soil
Abstract. Human activities cause a global loss of soil microbiome diversity and functionality. One way to reverse this trend is through microbiota transpla
academic.oup.com
August 4, 2025 at 9:13 AM
🌍 Discover the microbial world!
Our new preprint introduces MicrobeAtlas (www.microbeatlas.org), a tool and web-interface to map and visualize global microbial diversity. Explore millions of microbiomes - open, interactive, and designed for discovery.

🔗 www.biorxiv.org/content/10.1...
microbeAtlas
The aggregated analysis of a large set of metagenomic sequenced samples enables the accumulation of information on the typical abundances and environments in which unknown or poorly studied microbial taxa are present. This provides a first line of information on the types of environments unknown microbial taxa are often found in and enables the inference of their abilities.
www.microbeatlas.org
July 21, 2025 at 9:25 AM
Did you know that some phages can switch genetic codes during infection via the use of suppressor tRNAs? 🧬
One year ago we identified a ribozyme group which appears to be crucial for this process!
Read the original article: rdcu.be/dANOT
Or the press release: shorturl.at/7UPFX

@kienbeck.bsky.social
March 24, 2025 at 2:29 PM
New preprint 🦠
We introduce a new global microbial trend that parallels established ecological concepts in animals/plants. Closely related taxa occur in similar communities- traceable for billions of years in all phyla and environments.
doi.org/10.1101/2024...

#bioinformatics #microbiology #ecology
November 18, 2024 at 7:43 AM