Martin Jones
@martinjones.bsky.social
Ex-physicist in a biology institute, working on image analysis and building new hardware at the Francis Crick Institute
ORCID: 0000-0003-0994-5652
ORCID: 0000-0003-0994-5652
Reposted by Martin Jones
Happy to share the first paper from my journey at @psich.bsky.social towards X-ray connectomics, now out in @natmethods.nature.com: www.nature.com/articles/s41...
November 27, 2025 at 10:21 AM
Happy to share the first paper from my journey at @psich.bsky.social towards X-ray connectomics, now out in @natmethods.nature.com: www.nature.com/articles/s41...
Reposted by Martin Jones
Organising symposia is a whole lot less work and more fun when you've got an enthusiastic group of fellow organisers to help out.
But #CBIAS2025 was my 6th and I think it's now time to step back a little.
So from next year, @lankylaste.bsky.social will be taking the lead.
Roll on #CBIAS2026!
But #CBIAS2025 was my 6th and I think it's now time to step back a little.
So from next year, @lankylaste.bsky.social will be taking the lead.
Roll on #CBIAS2026!
December 2, 2025 at 2:57 PM
Organising symposia is a whole lot less work and more fun when you've got an enthusiastic group of fellow organisers to help out.
But #CBIAS2025 was my 6th and I think it's now time to step back a little.
So from next year, @lankylaste.bsky.social will be taking the lead.
Roll on #CBIAS2026!
But #CBIAS2025 was my 6th and I think it's now time to step back a little.
So from next year, @lankylaste.bsky.social will be taking the lead.
Roll on #CBIAS2026!
Reposted by Martin Jones
Researchers at the Crick, @psich.bsky.social and @esrf.fr have developed a new way to look deeper into brain cell connections by using a particle accelerator and a kind of resin borrowed from the aerospace industry.
www.crick.ac.uk/news/2025-11...
www.crick.ac.uk/news/2025-11...
From aerospace to neuroscience: new imaging tech captures the brain’s intricate connections
Inspired by technologies used in aerospace engineering, scientists have developed a way to capture the brain’s intricate structures using X-rays without destroying the samples.
www.crick.ac.uk
November 27, 2025 at 12:10 PM
Researchers at the Crick, @psich.bsky.social and @esrf.fr have developed a new way to look deeper into brain cell connections by using a particle accelerator and a kind of resin borrowed from the aerospace industry.
www.crick.ac.uk/news/2025-11...
www.crick.ac.uk/news/2025-11...
Reposted by Martin Jones
Want to automatically analyse your microscopy images but have no idea where to start?
👇
👇
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Introduction to Image Analysis 2026
www.rms.org.uk
December 1, 2025 at 10:10 AM
Want to automatically analyse your microscopy images but have no idea where to start?
👇
👇
Reposted by Martin Jones
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Introduction to Image Analysis 2026
www.rms.org.uk
December 1, 2025 at 11:23 AM
Reposted by Martin Jones
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Introduction to Image Analysis 2026
www.rms.org.uk
December 1, 2025 at 10:09 AM
Applications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open!
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org
www.rms.org.uk/rms-event-ca...
Reposted by Martin Jones
THANK YOU ALL for making another edition of CBIAS so special! Stay tuned for next year’s dates, we look forward to seeing you all again soon
#CBIAS2025
#CBIAS2025
November 26, 2025 at 10:45 AM
THANK YOU ALL for making another edition of CBIAS so special! Stay tuned for next year’s dates, we look forward to seeing you all again soon
#CBIAS2025
#CBIAS2025
Reposted by Martin Jones
Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social 🎉 SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing
📄 arxiv.org/pdf/2507.01009 (1/N)
📄 arxiv.org/pdf/2507.01009 (1/N)
September 23, 2025 at 8:32 AM
Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social 🎉 SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing
📄 arxiv.org/pdf/2507.01009 (1/N)
📄 arxiv.org/pdf/2507.01009 (1/N)
Reposted by Martin Jones
An immense thank you again to @cbias.bsky.social committee, sponsors and fellow imaging friends for this fantastic symposium!
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
November 25, 2025 at 6:26 PM
An immense thank you again to @cbias.bsky.social committee, sponsors and fellow imaging friends for this fantastic symposium!
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
It's is not the end but the beginning of tons of papers to read, colleagues to contact, new collaborations to form. And most importantly, it's a 'see you soon' #CBIAS2026 🔬🥰
Reposted by Martin Jones
Another brilliant #CBIAS2025. Now I know the rest of my week will be testing out all those cool new analysis tools!
November 25, 2025 at 7:18 PM
Another brilliant #CBIAS2025. Now I know the rest of my week will be testing out all those cool new analysis tools!
Reposted by Martin Jones
Congratulations to @aafkegros.bsky.social for winning the Best Poster Award at #CBIAS2025! 🎉 Their Microscopy Nodes Blender plugin not only makes visualisation easier, but also shines as a brilliant link between computer vision, mathematics, and biology.
November 25, 2025 at 3:56 PM
Congratulations to @aafkegros.bsky.social for winning the Best Poster Award at #CBIAS2025! 🎉 Their Microscopy Nodes Blender plugin not only makes visualisation easier, but also shines as a brilliant link between computer vision, mathematics, and biology.
Reposted by Martin Jones
Had such a blast at #CBIAS2025 — a meeting full of image-analysis nerds (what more could you want?).
If you’d like to learn more about movement, the Python package I presented, my slides are live at neuroinformatics.dev/slides-movem...
If you’d like to learn more about movement, the Python package I presented, my slides are live at neuroinformatics.dev/slides-movem...
November 25, 2025 at 5:01 PM
Had such a blast at #CBIAS2025 — a meeting full of image-analysis nerds (what more could you want?).
If you’d like to learn more about movement, the Python package I presented, my slides are live at neuroinformatics.dev/slides-movem...
If you’d like to learn more about movement, the Python package I presented, my slides are live at neuroinformatics.dev/slides-movem...
Reposted by Martin Jones
It was brilliant having the opportunity to chair this session at #CBIAS2025. Thank you to all the wonderful speakers discussing new tools for morphological analysis and event detection in microscopy 🔬
Day two of #CBIAS2025 kicked off by @lankylaste.bsky.social from @crick.ac.uk and the first session is on physical and mathematical modelling chaired by @natalieah.bsky.social , with the first presenter Ewa Paluch from @cam.bsky.social
November 25, 2025 at 3:29 PM
It was brilliant having the opportunity to chair this session at #CBIAS2025. Thank you to all the wonderful speakers discussing new tools for morphological analysis and event detection in microscopy 🔬
Reposted by Martin Jones
Second #CBIAS2025 panel discussion on Interdisciplinary collaboration in bioimage analysis chaired by @virginieuhlmann.bsky.social panellists are @candiceroufosse.bsky.social from @imperialcollegeldn.bsky.social Andy French from @uniofnottingham.bsky.social and Amir Patel from @ucl.ac.uk
November 25, 2025 at 3:00 PM
Second #CBIAS2025 panel discussion on Interdisciplinary collaboration in bioimage analysis chaired by @virginieuhlmann.bsky.social panellists are @candiceroufosse.bsky.social from @imperialcollegeldn.bsky.social Andy French from @uniofnottingham.bsky.social and Amir Patel from @ucl.ac.uk
Reposted by Martin Jones
Last but not least: Samantha Ahern from the Society of Research Software #CBIAS2025
November 25, 2025 at 2:47 PM
Last but not least: Samantha Ahern from the Society of Research Software #CBIAS2025
Reposted by Martin Jones
The TrackMate helper is there to do just that. #CBIAS2025
November 25, 2025 at 2:31 PM
The TrackMate helper is there to do just that. #CBIAS2025
Reposted by Martin Jones
Lots of new features in TrackMate but with that comes increased uncertainty: which one is the right one? #CBIAS2025
November 25, 2025 at 2:27 PM
Lots of new features in TrackMate but with that comes increased uncertainty: which one is the right one? #CBIAS2025
Reposted by Martin Jones
Second speaker is @jytinevez.bsky.social from @institutpasteur.bsky.social introducing TrackMate 8 #CBIAS2025
November 25, 2025 at 2:18 PM
Second speaker is @jytinevez.bsky.social from @institutpasteur.bsky.social introducing TrackMate 8 #CBIAS2025
Reposted by Martin Jones
Jean-Yves @jytinevez.bsky.social showcases the new #Trackmate version and the breadth of image analysis done at @pasteur.fr
#CBIAS2025
#CBIAS2025
November 25, 2025 at 2:17 PM
Jean-Yves @jytinevez.bsky.social showcases the new #Trackmate version and the breadth of image analysis done at @pasteur.fr
#CBIAS2025
#CBIAS2025
Reposted by Martin Jones
Some more information and background reading #CBIAS2025
November 25, 2025 at 2:13 PM
Some more information and background reading #CBIAS2025
Reposted by Martin Jones
On to session six of #CBIAS2025 chaired by @olatznv.bsky.social from @imperialcollegeldn.bsky.social first speaker is Kimberly Meechan from @ucl.ac.uk introducing the HEFTIE project: tools and training for getting started with OME-ZARR
November 25, 2025 at 2:06 PM
On to session six of #CBIAS2025 chaired by @olatznv.bsky.social from @imperialcollegeldn.bsky.social first speaker is Kimberly Meechan from @ucl.ac.uk introducing the HEFTIE project: tools and training for getting started with OME-ZARR
Reposted by Martin Jones
November 25, 2025 at 1:06 PM
Reposted by Martin Jones
Overcoming Nyquist-Shannon limitation with deep learning #CBIAS2025
November 25, 2025 at 12:21 PM
Overcoming Nyquist-Shannon limitation with deep learning #CBIAS2025
Reposted by Martin Jones
#CBIAS2025 Checklists to improve figures for publications derived from community consensus www.nature.com/articles/s41...
November 25, 2025 at 11:38 AM
#CBIAS2025 Checklists to improve figures for publications derived from community consensus www.nature.com/articles/s41...
Reposted by Martin Jones
Last speaker of the session Ilaria Testa of @scilifelab.se from @kthuniversity.bsky.social on imaging very small things with high dynamics. #CBIAS2025
November 25, 2025 at 12:10 PM
Last speaker of the session Ilaria Testa of @scilifelab.se from @kthuniversity.bsky.social on imaging very small things with high dynamics. #CBIAS2025