Pablo Meyer
@oldbap.bsky.social
IBM research, DREAM challenges director, rabdomante, Sys Bio,👃🏽alma-mater UNAM
Pinned
Pablo Meyer
@oldbap.bsky.social
· Jul 22
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of DNA, where sequences...
www.arxiv.org
So here are the results of 2 years of hard work:
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
Reposted by Pablo Meyer
VAEs for molecular generation m: a novel take: arxiv.org/pdf/2511.02769
arxiv.org
November 6, 2025 at 4:28 PM
VAEs for molecular generation m: a novel take: arxiv.org/pdf/2511.02769
Reposted by Pablo Meyer
Una nación que comparte un pasado europeo, un espacio norteamericano y un alma en la naturaleza que la rodea: 'Breve historia de Canadá', de Jean Meyer. #Novedad #PróximamenteEnTuLibrería Nueva #ColecciónBrevesHistoriasDePaísesDeAmérica buff.ly/cqo2Ozh
September 14, 2025 at 8:00 AM
Una nación que comparte un pasado europeo, un espacio norteamericano y un alma en la naturaleza que la rodea: 'Breve historia de Canadá', de Jean Meyer. #Novedad #PróximamenteEnTuLibrería Nueva #ColecciónBrevesHistoriasDePaísesDeAmérica buff.ly/cqo2Ozh
The rrrrrrrrobots are herrrrrrrreee
September 6, 2025 at 1:10 PM
The rrrrrrrrobots are herrrrrrrreee
Have the same question for my 2006 Prius
After 20 years of service, an NPR reporter's beloved minivan is on the fritz. But what is its best and highest calling now: Pass it on to another family or recycle it into parts?
Sell it, donate it — recycle it? A beloved old minivan faces a fork in the road
After 20 years of service, an NPR reporter's beloved minivan is on the fritz. But what is its best and highest calling now: Pass it on to another family or recycle it into parts?
n.pr
September 6, 2025 at 1:08 PM
Have the same question for my 2006 Prius
Reposted by Pablo Meyer
🧠Can AI agents predict #Alzheimers? Participate in our DREAM challenge agentic track to find out!
We provide unique training + test data for AI agents: snRNA-seq, IHC, stage, etc synapse.org/Synapse:syn6...
Also co-submit your agent paper to agents4science.stanford.edu
We provide unique training + test data for AI agents: snRNA-seq, IHC, stage, etc synapse.org/Synapse:syn6...
Also co-submit your agent paper to agents4science.stanford.edu
August 12, 2025 at 10:59 PM
🧠Can AI agents predict #Alzheimers? Participate in our DREAM challenge agentic track to find out!
We provide unique training + test data for AI agents: snRNA-seq, IHC, stage, etc synapse.org/Synapse:syn6...
Also co-submit your agent paper to agents4science.stanford.edu
We provide unique training + test data for AI agents: snRNA-seq, IHC, stage, etc synapse.org/Synapse:syn6...
Also co-submit your agent paper to agents4science.stanford.edu
‘It is because agents never know completely what they are doing that what they do has more sense than they know.’ Pierre Bourdieu
August 6, 2025 at 10:04 PM
‘It is because agents never know completely what they are doing that what they do has more sense than they know.’ Pierre Bourdieu
So here are the results of 2 years of hard work:
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of DNA, where sequences...
www.arxiv.org
July 22, 2025 at 11:24 PM
So here are the results of 2 years of hard work:
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results.
Paper: www.arxiv.org/abs/2507.05265
Code: github.com/BiomedSciAI/...
ISMB/ECCB 2025:
Join us for the DREAM Challenges session on Monday, 21 July, 14:00 Explore community-driven benchmarking for Foundation Models—run a live experiment for LLMs.
@bowang87.bsky.social @anshulkundaje.bsky.social @cziscience.bsky.social @mariabrbic.bsky.social @juliosaezrod.bsky.social
Join us for the DREAM Challenges session on Monday, 21 July, 14:00 Explore community-driven benchmarking for Foundation Models—run a live experiment for LLMs.
@bowang87.bsky.social @anshulkundaje.bsky.social @cziscience.bsky.social @mariabrbic.bsky.social @juliosaezrod.bsky.social
July 20, 2025 at 4:15 PM
ISMB/ECCB 2025:
Join us for the DREAM Challenges session on Monday, 21 July, 14:00 Explore community-driven benchmarking for Foundation Models—run a live experiment for LLMs.
@bowang87.bsky.social @anshulkundaje.bsky.social @cziscience.bsky.social @mariabrbic.bsky.social @juliosaezrod.bsky.social
Join us for the DREAM Challenges session on Monday, 21 July, 14:00 Explore community-driven benchmarking for Foundation Models—run a live experiment for LLMs.
@bowang87.bsky.social @anshulkundaje.bsky.social @cziscience.bsky.social @mariabrbic.bsky.social @juliosaezrod.bsky.social
Our paper on SNP-aware DNA foundation model is out!
Li, Dey, Kwon, Danziger, Rosen-Tzvi, Hu, Kozloski, Tsou, Dandala, Meyer: BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects https://arxiv.org/abs/2507.05265 https://arxiv.org/pdf/2507.05265 https://arxiv.org/html/2507.05265
July 9, 2025 at 2:59 PM
Our paper on SNP-aware DNA foundation model is out!
Reposted by Pablo Meyer
Dandala, Danziger, Barkan, Biswas, Gurev, Hu, Madgwick, Koseki, Kozlovski, Rosen-Zvi, Shimoni, Tsou: BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models https://arxiv.org/abs/2506.14861 https://arxiv.org/pdf/2506.14861 https://arxiv.org/html/2506.14861
June 19, 2025 at 7:15 AM
Dandala, Danziger, Barkan, Biswas, Gurev, Hu, Madgwick, Koseki, Kozlovski, Rosen-Zvi, Shimoni, Tsou: BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models https://arxiv.org/abs/2506.14861 https://arxiv.org/pdf/2506.14861 https://arxiv.org/html/2506.14861
Le hubieran dado el avion del bienestar!
May 22, 2025 at 12:27 PM
Le hubieran dado el avion del bienestar!
See you in Liverpool!
At DREAM we have been benchmarking and discussing methods in biology for the past 15 years, but foundation models are a different beast, come join us for a special session @ISMB on this
Monday July 21st 2pm @chanzuckerberg.bsky.social @tempusai.bsky.social @ebi.embl.org
www.iscb.org/ismbeccb2025...
Monday July 21st 2pm @chanzuckerberg.bsky.social @tempusai.bsky.social @ebi.embl.org
www.iscb.org/ismbeccb2025...
DREAM Challenges
ISCB - International Society for Computational Biology
www.iscb.org
May 15, 2025 at 2:59 PM
See you in Liverpool!
Reposted by Pablo Meyer
With a contemporary smartphone, capturing, transmitting, and replicating sounds and visuals is a breeze, yet replicating scents remains elusive. If you want to change this, consider joining the 2025 DREAM Olfaction Challenge at www.synapse.org/Synapse:syn6....
@oldbap.bsky.social
@oldbap.bsky.social
DREAM Olfactory Mixtures Prediction Challenge 2025
'DREAM Olfactory Mixtures Prediction Challenge 2025' (Synapse ID: syn64743570) is a project on Synapse. Synapse is a platform for supporting scientific collaborations centered around shared biomed...
www.synapse.org
May 7, 2025 at 11:38 PM
With a contemporary smartphone, capturing, transmitting, and replicating sounds and visuals is a breeze, yet replicating scents remains elusive. If you want to change this, consider joining the 2025 DREAM Olfaction Challenge at www.synapse.org/Synapse:syn6....
@oldbap.bsky.social
@oldbap.bsky.social
Reposted by Pablo Meyer
A very important from our group #compchemsky #aiforscience #quantumchemistry
El Agente calculates complex quantum chemistry calculations from natural language!
Please re-share with your network.
@thematterlab.bsky.social @uoft.bsky.social #nvidia
El Agente calculates complex quantum chemistry calculations from natural language!
Please re-share with your network.
@thematterlab.bsky.social @uoft.bsky.social #nvidia
👋 🤖 Meet El Agente–an autonomous AI for performing computational chemistry, made by the Matter Lab @uoft.bsky.social. This #LLM-powered multi-agent system making computational chemistry more accessible will soon be available worldwide. Sign up 4 the launch: acceleration.utoronto.ca/news/meet-el...
May 6, 2025 at 2:20 PM
A very important from our group #compchemsky #aiforscience #quantumchemistry
El Agente calculates complex quantum chemistry calculations from natural language!
Please re-share with your network.
@thematterlab.bsky.social @uoft.bsky.social #nvidia
El Agente calculates complex quantum chemistry calculations from natural language!
Please re-share with your network.
@thematterlab.bsky.social @uoft.bsky.social #nvidia
Reposted by Pablo Meyer
As promised, a 'skeet' -orial on our paper published last week !
Now online! Engineering TCR-controlled fuzzy logic into CAR T cells enhances therapeutic specificity
Engineering TCR-controlled fuzzy logic into CAR T cells enhances therapeutic specificity
Robot-assisted analysis and theoretical modeling of TCR/CAR crosstalk enable the design of adoptive T cell therapies that maximize anti-tumor activity and minimize toxicity in healthy tissues.
dlvr.it
April 14, 2025 at 1:05 PM
As promised, a 'skeet' -orial on our paper published last week !
I.B.M.
Insha’llah, ‘Bukra,’ & ‘Ma’lesh, a typical Egyptian expression which roughly translate, respectively, as “God willing,” “tomorrow” and “no matter”. The ancient and poetic version of procrastinating.
Insha’llah, ‘Bukra,’ & ‘Ma’lesh, a typical Egyptian expression which roughly translate, respectively, as “God willing,” “tomorrow” and “no matter”. The ancient and poetic version of procrastinating.
April 16, 2025 at 12:10 AM
I.B.M.
Insha’llah, ‘Bukra,’ & ‘Ma’lesh, a typical Egyptian expression which roughly translate, respectively, as “God willing,” “tomorrow” and “no matter”. The ancient and poetic version of procrastinating.
Insha’llah, ‘Bukra,’ & ‘Ma’lesh, a typical Egyptian expression which roughly translate, respectively, as “God willing,” “tomorrow” and “no matter”. The ancient and poetic version of procrastinating.
Reposted by Pablo Meyer
Sign up for our latest challenge: www.synapse.org/Synapse:syn6...
April 10, 2025 at 12:56 PM
Sign up for our latest challenge: www.synapse.org/Synapse:syn6...
All the truth lies in unsent emails!
March 28, 2025 at 10:46 PM
All the truth lies in unsent emails!
Reposted by Pablo Meyer
L'OUvroir de LIttérature POtentielle
a la tristesse de vous annoncer
que l’oulipien
Jacques Roubaud
est désormais
excusé
à ses réunions
pour cause de décès
a la tristesse de vous annoncer
que l’oulipien
Jacques Roubaud
est désormais
excusé
à ses réunions
pour cause de décès
December 5, 2024 at 2:16 PM
L'OUvroir de LIttérature POtentielle
a la tristesse de vous annoncer
que l’oulipien
Jacques Roubaud
est désormais
excusé
à ses réunions
pour cause de décès
a la tristesse de vous annoncer
que l’oulipien
Jacques Roubaud
est désormais
excusé
à ses réunions
pour cause de décès
And this @dreamchallenges.bsky.social came out in @naturebiotech.bsky.social
A community effort to optimize sequence-based deep learning models of gene regulation - Nature Biotechnology
A benchmarking competition improves tools that predict how regulatory regions control gene expression.
go.nature.com
November 22, 2024 at 4:22 AM
And this @dreamchallenges.bsky.social came out in @naturebiotech.bsky.social
Russian troops on Mexican Independence Day…
September 17, 2023 at 2:24 PM
Russian troops on Mexican Independence Day…