phy_papers
@phypapers.bsky.social
Continuous feed for phylogenetics papers from PubMed, arXiv, bioRxiv, and EcoEvoRxiv. Run by @roblanfear.bsky.social
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Mutations in SARS-CoV-2 spike protein identified by mass spectrometry based phylogenetics and their structural and functional consequences https://pubmed.ncbi.nlm.nih.gov/41587096/
January 27, 2026 at 1:51 AM
Mutations in SARS-CoV-2 spike protein identified by mass spectrometry based phylogenetics and their structural and functional consequences https://pubmed.ncbi.nlm.nih.gov/41587096/
NLR immune receptors can exhibit tissue-specific expression patterns across legume species https://www.biorxiv.org/content/10.64898/2026.01.25.701577v1
January 27, 2026 at 1:18 AM
NLR immune receptors can exhibit tissue-specific expression patterns across legume species https://www.biorxiv.org/content/10.64898/2026.01.25.701577v1
Phylogenetic support of pebS as a phage-exclusive auxiliary metabolic gene https://www.biorxiv.org/content/10.64898/2026.01.23.701310v1
January 27, 2026 at 12:45 AM
Phylogenetic support of pebS as a phage-exclusive auxiliary metabolic gene https://www.biorxiv.org/content/10.64898/2026.01.23.701310v1
Genome-Guided Characterization of Weissella Species Highlights Strain-Specific Functional Traits Relevant to Food Fermentation and Probiotics https://www.biorxiv.org/content/10.64898/2026.01.23.701356v1
January 27, 2026 at 12:12 AM
Genome-Guided Characterization of Weissella Species Highlights Strain-Specific Functional Traits Relevant to Food Fermentation and Probiotics https://www.biorxiv.org/content/10.64898/2026.01.23.701356v1
Evolutionary history and functional divergence of hydroxycarboxylic acid receptors in primates https://www.biorxiv.org/content/10.64898/2026.01.23.701403v1
January 26, 2026 at 11:39 PM
Evolutionary history and functional divergence of hydroxycarboxylic acid receptors in primates https://www.biorxiv.org/content/10.64898/2026.01.23.701403v1
antigen-prime: Simulating coupled genetic and antigenic evolution of influenza virus https://www.biorxiv.org/content/10.64898/2026.01.23.701420v1
January 26, 2026 at 11:06 PM
antigen-prime: Simulating coupled genetic and antigenic evolution of influenza virus https://www.biorxiv.org/content/10.64898/2026.01.23.701420v1
Systematic reassessment of Ambiphrya and Apiosoma (Ciliophora, Peritrichia), with morpho-molecular characterization of two epibiotic ciliates from rainbow trout in Korea https://pubmed.ncbi.nlm.nih.gov/41579655/
January 26, 2026 at 6:48 PM
Systematic reassessment of Ambiphrya and Apiosoma (Ciliophora, Peritrichia), with morpho-molecular characterization of two epibiotic ciliates from rainbow trout in Korea https://pubmed.ncbi.nlm.nih.gov/41579655/
Comparative analysis of the NAC gene family in five Polygonaceae species, focusing on Rheum officinale Baill https://pubmed.ncbi.nlm.nih.gov/41579693/
January 26, 2026 at 3:31 PM
Comparative analysis of the NAC gene family in five Polygonaceae species, focusing on Rheum officinale Baill https://pubmed.ncbi.nlm.nih.gov/41579693/
Emergence of blaNDM-carrying Escherichia coli ST167 isolate in rural communities in western Shandong Province, China https://pubmed.ncbi.nlm.nih.gov/41579931/
January 26, 2026 at 12:14 PM
Emergence of blaNDM-carrying Escherichia coli ST167 isolate in rural communities in western Shandong Province, China https://pubmed.ncbi.nlm.nih.gov/41579931/
Genomic Epidemiology and Evolutionary Dynamics of Bordetella pertussis: A Comparative Study Between China and Global Strains (2018-2024) https://pubmed.ncbi.nlm.nih.gov/41579932/
January 26, 2026 at 8:57 AM
Genomic Epidemiology and Evolutionary Dynamics of Bordetella pertussis: A Comparative Study Between China and Global Strains (2018-2024) https://pubmed.ncbi.nlm.nih.gov/41579932/
Metagenomic screening of the virome of symptomatic tomato plants from La Réunion Island uncovers a complex of viruses including a newly identified whitefly-transmitted polerovirus https://pubmed.ncbi.nlm.nih.gov/41581112/
January 26, 2026 at 5:40 AM
Metagenomic screening of the virome of symptomatic tomato plants from La Réunion Island uncovers a complex of viruses including a newly identified whitefly-transmitted polerovirus https://pubmed.ncbi.nlm.nih.gov/41581112/
Genomic Epidemiology and Evolutionary Dynamics of Bordetella pertussis: A Comparative Study Between China and Global Strains (2018-2024) https://pubmed.ncbi.nlm.nih.gov/41579932/
January 26, 2026 at 2:23 AM
Genomic Epidemiology and Evolutionary Dynamics of Bordetella pertussis: A Comparative Study Between China and Global Strains (2018-2024) https://pubmed.ncbi.nlm.nih.gov/41579932/
Evolutionary history and functional divergence of hydroxycarboxylic acid receptors in primates https://www.biorxiv.org/content/10.64898/2026.01.23.701403v1
January 25, 2026 at 11:06 PM
Evolutionary history and functional divergence of hydroxycarboxylic acid receptors in primates https://www.biorxiv.org/content/10.64898/2026.01.23.701403v1
Symbiosis-associated UMAMIT transporters required for establishing efficient nitrogen fixation in Medicago truncatula https://pubmed.ncbi.nlm.nih.gov/41572573/
January 25, 2026 at 9:07 PM
Symbiosis-associated UMAMIT transporters required for establishing efficient nitrogen fixation in Medicago truncatula https://pubmed.ncbi.nlm.nih.gov/41572573/
Pulmonary pneumocystosis in a captive kinkajou with molecular evidence of a novel Pneumocystis lineage https://pubmed.ncbi.nlm.nih.gov/41572579/
January 25, 2026 at 8:23 PM
Pulmonary pneumocystosis in a captive kinkajou with molecular evidence of a novel Pneumocystis lineage https://pubmed.ncbi.nlm.nih.gov/41572579/
First detection and autochthonous transmission of monkeypox virus clade Ib in the Netherlands, October to November, 2025 https://pubmed.ncbi.nlm.nih.gov/41572902/
January 25, 2026 at 7:39 PM
First detection and autochthonous transmission of monkeypox virus clade Ib in the Netherlands, October to November, 2025 https://pubmed.ncbi.nlm.nih.gov/41572902/
Isolation and genomic analysis of secondary metabolism in cave Actinomycetota from biofilms and Ceuthophilus https://pubmed.ncbi.nlm.nih.gov/41573672/
January 25, 2026 at 6:55 PM
Isolation and genomic analysis of secondary metabolism in cave Actinomycetota from biofilms and Ceuthophilus https://pubmed.ncbi.nlm.nih.gov/41573672/
Natural infection by Trypanosoma spp. (Trypanosomatida: Trypanosomatidae) in Micropygomyia cayennensis cayennensis (Diptera: Psychodidae) on Northern Colombia https://pubmed.ncbi.nlm.nih.gov/41574545/
January 25, 2026 at 6:11 PM
Natural infection by Trypanosoma spp. (Trypanosomatida: Trypanosomatidae) in Micropygomyia cayennensis cayennensis (Diptera: Psychodidae) on Northern Colombia https://pubmed.ncbi.nlm.nih.gov/41574545/
Mitochondrial genome analysis and molecular identification of two Culex tritaeniorhynchus (Diptera: Culicidae) clades from the Republic of Korea https://pubmed.ncbi.nlm.nih.gov/41574547/
January 25, 2026 at 5:27 PM
Mitochondrial genome analysis and molecular identification of two Culex tritaeniorhynchus (Diptera: Culicidae) clades from the Republic of Korea https://pubmed.ncbi.nlm.nih.gov/41574547/
Global population structure of Shiga toxin-producing Escherichia coli O103:H2 and the variation in their major virulence factor-encoding genetic elements https://pubmed.ncbi.nlm.nih.gov/41574901/
January 25, 2026 at 4:43 PM
Global population structure of Shiga toxin-producing Escherichia coli O103:H2 and the variation in their major virulence factor-encoding genetic elements https://pubmed.ncbi.nlm.nih.gov/41574901/
Novel ST3871 Escherichia coli exhibits diverse transmission modes, carrying the tet(X4) resistance gene https://pubmed.ncbi.nlm.nih.gov/41575200/
January 25, 2026 at 3:59 PM
Novel ST3871 Escherichia coli exhibits diverse transmission modes, carrying the tet(X4) resistance gene https://pubmed.ncbi.nlm.nih.gov/41575200/
STING single amino acid polymorphisms modulate iridovirus immune evasion and pathogenicity spectrum https://pubmed.ncbi.nlm.nih.gov/41576079/
January 25, 2026 at 3:15 PM
STING single amino acid polymorphisms modulate iridovirus immune evasion and pathogenicity spectrum https://pubmed.ncbi.nlm.nih.gov/41576079/
Genomic characterization of clinical and environmental isolates of Bacillus anthracis in Peru https://pubmed.ncbi.nlm.nih.gov/41576133/
January 25, 2026 at 2:31 PM
Genomic characterization of clinical and environmental isolates of Bacillus anthracis in Peru https://pubmed.ncbi.nlm.nih.gov/41576133/
Knockout of nAChR subunits in spider mites and their phytoseiid predators confers spinosyn cross-resistance and reveals a conserved mode of action in mites https://pubmed.ncbi.nlm.nih.gov/41577144/
January 25, 2026 at 1:47 PM
Knockout of nAChR subunits in spider mites and their phytoseiid predators confers spinosyn cross-resistance and reveals a conserved mode of action in mites https://pubmed.ncbi.nlm.nih.gov/41577144/
Metabolite diversity of Microcystis strains shows tight correspondence to genotype and may contribute to ecotype specificities https://pubmed.ncbi.nlm.nih.gov/41578024/
January 25, 2026 at 1:03 PM
Metabolite diversity of Microcystis strains shows tight correspondence to genotype and may contribute to ecotype specificities https://pubmed.ncbi.nlm.nih.gov/41578024/