phy_papers
@phypapers.bsky.social
Continuous feed for phylogenetics papers from PubMed, arXiv, bioRxiv, and EcoEvoRxiv. Run by @roblanfear.bsky.social
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
AmpliPhy improves gene trees by adding homologs without affecting alignments https://www.biorxiv.org/content/10.64898/2026.01.26.701724v1
January 27, 2026 at 11:27 PM
AmpliPhy improves gene trees by adding homologs without affecting alignments https://www.biorxiv.org/content/10.64898/2026.01.26.701724v1
A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota) https://www.biorxiv.org/content/10.64898/2026.01.27.701938v1
January 27, 2026 at 11:09 PM
A robust phylogenetic framework for ophiostomatoid fungi: orders Ophiostomatales and Microascales (Sordariomycetes, Ascomycota) https://www.biorxiv.org/content/10.64898/2026.01.27.701938v1
Metagenomic screening of the virome of symptomatic tomato plants from La Réunion Island uncovers a complex of viruses including a newly identified whitefly-transmitted polerovirus https://pubmed.ncbi.nlm.nih.gov/41581112/
January 27, 2026 at 9:07 PM
Metagenomic screening of the virome of symptomatic tomato plants from La Réunion Island uncovers a complex of viruses including a newly identified whitefly-transmitted polerovirus https://pubmed.ncbi.nlm.nih.gov/41581112/
Postharvest fruit rot of apple in the Loess Plateau region of China caused by Neocyphella psychrotropha sp. nov., representing a new family in Agaricales (Basidiomycota) https://pubmed.ncbi.nlm.nih.gov/41581230/
January 27, 2026 at 8:34 PM
Postharvest fruit rot of apple in the Loess Plateau region of China caused by Neocyphella psychrotropha sp. nov., representing a new family in Agaricales (Basidiomycota) https://pubmed.ncbi.nlm.nih.gov/41581230/
Viral metagenomics reveals the RNA viral composition of herbivorous wildlife on the Qinghai-Tibet Plateau https://pubmed.ncbi.nlm.nih.gov/41581442/
January 27, 2026 at 8:01 PM
Viral metagenomics reveals the RNA viral composition of herbivorous wildlife on the Qinghai-Tibet Plateau https://pubmed.ncbi.nlm.nih.gov/41581442/
Comprehensive Genomic Analysis of ESBL- and Carbapenemase-producing Escherichia coli ST131 in Japan: Genetic Characteristics of Pandemic Clade C https://pubmed.ncbi.nlm.nih.gov/41581600/
January 27, 2026 at 7:28 PM
Comprehensive Genomic Analysis of ESBL- and Carbapenemase-producing Escherichia coli ST131 in Japan: Genetic Characteristics of Pandemic Clade C https://pubmed.ncbi.nlm.nih.gov/41581600/
The first mitochondrial genome sequence and phylogenetic analysis of Clinostomum piscidium (Platyhelminthes: Clinostomidae): a first representative from India https://pubmed.ncbi.nlm.nih.gov/41581766/
January 27, 2026 at 6:55 PM
The first mitochondrial genome sequence and phylogenetic analysis of Clinostomum piscidium (Platyhelminthes: Clinostomidae): a first representative from India https://pubmed.ncbi.nlm.nih.gov/41581766/
Identification and functional characterization of heat shock transcription factor genes in Rhododendron Delavayi under heat stress https://pubmed.ncbi.nlm.nih.gov/41582120/
January 27, 2026 at 6:22 PM
Identification and functional characterization of heat shock transcription factor genes in Rhododendron Delavayi under heat stress https://pubmed.ncbi.nlm.nih.gov/41582120/
Comprehensive analysis of CBL and CIPK gene families in Magnolia biondii and functional characterization of MbCBL4 under salt stress https://pubmed.ncbi.nlm.nih.gov/41582275/
January 27, 2026 at 5:49 PM
Comprehensive analysis of CBL and CIPK gene families in Magnolia biondii and functional characterization of MbCBL4 under salt stress https://pubmed.ncbi.nlm.nih.gov/41582275/
Characterization of the complete chloroplast genome of Aesculus pavia https://pubmed.ncbi.nlm.nih.gov/41583380/
January 27, 2026 at 5:16 PM
Characterization of the complete chloroplast genome of Aesculus pavia https://pubmed.ncbi.nlm.nih.gov/41583380/
Complete mitochondrial genome sequence of Leucoptera malifoliella (Lepidoptera: Lyonetiidae) https://pubmed.ncbi.nlm.nih.gov/41583381/
January 27, 2026 at 4:43 PM
Complete mitochondrial genome sequence of Leucoptera malifoliella (Lepidoptera: Lyonetiidae) https://pubmed.ncbi.nlm.nih.gov/41583381/
LILRB1 and LILRB2 genomics and transcriptomics in macaque and baboon species: polymorphism, diversification, and extensive alternative splicing https://pubmed.ncbi.nlm.nih.gov/41583460/
January 27, 2026 at 4:10 PM
LILRB1 and LILRB2 genomics and transcriptomics in macaque and baboon species: polymorphism, diversification, and extensive alternative splicing https://pubmed.ncbi.nlm.nih.gov/41583460/
Genomic-Based Epidemiological Analysis of the Post-Pandemic Mycoplasma pneumoniae Resurgence https://pubmed.ncbi.nlm.nih.gov/41583905/
January 27, 2026 at 3:37 PM
Genomic-Based Epidemiological Analysis of the Post-Pandemic Mycoplasma pneumoniae Resurgence https://pubmed.ncbi.nlm.nih.gov/41583905/
Comprehensive genomic identification and functional analysis of bHLH transcription factors in Ganoderma lucidum https://pubmed.ncbi.nlm.nih.gov/41584697/
January 27, 2026 at 3:04 PM
Comprehensive genomic identification and functional analysis of bHLH transcription factors in Ganoderma lucidum https://pubmed.ncbi.nlm.nih.gov/41584697/
Evolution and Spread of Regionally Adapted Newcastle Disease Virus Isolates From Live Bird Markets in Nigeria, 2023-2024 https://pubmed.ncbi.nlm.nih.gov/41584957/
January 27, 2026 at 2:31 PM
Evolution and Spread of Regionally Adapted Newcastle Disease Virus Isolates From Live Bird Markets in Nigeria, 2023-2024 https://pubmed.ncbi.nlm.nih.gov/41584957/
Lycoris × xiui, a new wild nothospecies from Anhui, China, a hybrid between L. longituba and L. sprengeri (Amaryllidaceae) https://pubmed.ncbi.nlm.nih.gov/41585309/
January 27, 2026 at 1:58 PM
Lycoris × xiui, a new wild nothospecies from Anhui, China, a hybrid between L. longituba and L. sprengeri (Amaryllidaceae) https://pubmed.ncbi.nlm.nih.gov/41585309/
Metagenomics enables the first detection of Trypanosoma sp. in Streblidae (Diptera: Hippoboscoidea) parasitizing bats in São Paulo, Brazil https://pubmed.ncbi.nlm.nih.gov/41585407/
January 27, 2026 at 1:25 PM
Metagenomics enables the first detection of Trypanosoma sp. in Streblidae (Diptera: Hippoboscoidea) parasitizing bats in São Paulo, Brazil https://pubmed.ncbi.nlm.nih.gov/41585407/
Revealing the Hidden Diversity of Aquatic and Terrestrial Fungi in Korea: 17 Newly Recorded Species https://pubmed.ncbi.nlm.nih.gov/41585849/
January 27, 2026 at 12:52 PM
Revealing the Hidden Diversity of Aquatic and Terrestrial Fungi in Korea: 17 Newly Recorded Species https://pubmed.ncbi.nlm.nih.gov/41585849/
Update on the HDV seroprevalence and genotype distribution among patients positive for HBsAg referred to a National Reference Laboratory in Cameroon between January 2019 and December 2020 https://pubmed.ncbi.nlm.nih.gov/41586030/
January 27, 2026 at 12:19 PM
Update on the HDV seroprevalence and genotype distribution among patients positive for HBsAg referred to a National Reference Laboratory in Cameroon between January 2019 and December 2020 https://pubmed.ncbi.nlm.nih.gov/41586030/
Molecular phylogeny and morphology reveal two novel entomopathogenic species of Hypocreales (Polycephalomycetaceae and Cordycipitaceae), from China https://pubmed.ncbi.nlm.nih.gov/41586038/
January 27, 2026 at 11:46 AM
Molecular phylogeny and morphology reveal two novel entomopathogenic species of Hypocreales (Polycephalomycetaceae and Cordycipitaceae), from China https://pubmed.ncbi.nlm.nih.gov/41586038/
Morphological and molecular data reveal one new species of Coltricia and one new species of Sidera in Hymenochaetales from South China https://pubmed.ncbi.nlm.nih.gov/41586039/
January 27, 2026 at 11:13 AM
Morphological and molecular data reveal one new species of Coltricia and one new species of Sidera in Hymenochaetales from South China https://pubmed.ncbi.nlm.nih.gov/41586039/
Complete chloroplast genome data of Plumbago indica L. a prominent medicinal plant https://pubmed.ncbi.nlm.nih.gov/41586076/
January 27, 2026 at 10:40 AM
Complete chloroplast genome data of Plumbago indica L. a prominent medicinal plant https://pubmed.ncbi.nlm.nih.gov/41586076/
PCR-based detection of Enterocytozoon bieneusi in diarrheic patients from Guangdong, Shandong, Shanghai, and Zhejiang Provinces, China: a study on prevalence and genotypic characteristics https://pubmed.ncbi.nlm.nih.gov/41586313/
January 27, 2026 at 10:07 AM
PCR-based detection of Enterocytozoon bieneusi in diarrheic patients from Guangdong, Shandong, Shanghai, and Zhejiang Provinces, China: a study on prevalence and genotypic characteristics https://pubmed.ncbi.nlm.nih.gov/41586313/
Molecular investigation on hazelnut-associated Fusarium isolates belonging to the Fusarium citricola species complex https://pubmed.ncbi.nlm.nih.gov/41586354/
January 27, 2026 at 9:34 AM
Molecular investigation on hazelnut-associated Fusarium isolates belonging to the Fusarium citricola species complex https://pubmed.ncbi.nlm.nih.gov/41586354/
Genetic landscape of Italian SRLV: insights from passive surveillance-based phylogenetic analysis https://pubmed.ncbi.nlm.nih.gov/41586368/
January 27, 2026 at 9:01 AM
Genetic landscape of Italian SRLV: insights from passive surveillance-based phylogenetic analysis https://pubmed.ncbi.nlm.nih.gov/41586368/