Rutika Patel
@rutika90.bsky.social
13 followers
20 following
1 posts
PhD Candidate, CUNY Graduate Center @thegraduatecenter.bsky.social | Computational Chemistry | Molecular Dynamics Simulations |
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Rutika Patel
@rutika90.bsky.social
· May 1
Unveiling the Conformational Dynamics of the Histone Tails Using Markov State Modeling
Biomolecules predominantly exert their function by altering conformational dynamics. The nucleosome core particle (NCP) is the fundamental unit of chromatin. DNA with ∼146 base pairs wraps around the ...
pubs.acs.org
Reposted by Rutika Patel
Loverde laboratory
@sloverde.bsky.social
· Feb 12
Publication alert: SIRAH-CG MD simulations capture enhanced DNA breathing & multiple free energy minima, revealing key nucleosome dynamics. Thanks to team @sloverde.bsky.social @rutika90.bsky.social
@aip.bsky.social
pubs.aip.org/aip/jcp/arti...
@aip.bsky.social
pubs.aip.org/aip/jcp/arti...
Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis
The conformational dynamics of the DNA in the nucleosome may play a role in governing gene regulation and accessibility and impact higher-order chromatin struct
pubs.aip.org
Reposted by Rutika Patel
Abhik
@abhikgmoulock.bsky.social
· Feb 11
Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis
The conformational dynamics of the DNA in the nucleosome may play a role in governing gene regulation and accessibility and impact higher-order chromatin struct
pubs.aip.org