VIAMD
@viamd.bsky.social
35 followers 19 following 12 posts
VIAMD is an interactive analysis tool for MD. https://github.com/scanberg/viamd. Article: https://pubs.acs.org/doi/10.1021/acs.jcim.3c01033. Wiki: https://github.com/scanberg/viamd/wiki Tutorial playlist: https://bit.ly/4aRsPrh #compchem
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viamd.bsky.social
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
VIAMD - Quick Overview
YouTube video by mathieu linares
youtu.be
viamd.bsky.social
Very nice work! I saw that you are sharing gro file from your simulation in zenodo. Thank you for that. Would you be willing to also share trajectories. We are always trying to find cool and large trajectory to test our software.
viamd.bsky.social
You can now save Ultra HD (8k) resolution screenshot in VIAMD, with or without the GUI. Here illustrated on a visualization of a Moebius ring calculated with @veloxchem.bsky.social. #compchem
Reposted by VIAMD
veloxchem.bsky.social
Road trip to #watoc! See you there. #compchem
Reposted by VIAMD
mathieulinares.bsky.social
See you there. I'll be at the @veloxchem.bsky.social booth. Presenting our QM software as well as @viamd.bsky.social. #WATOC #compchem
Reposted by VIAMD
cg-martini.bsky.social
Registration deadline June 15 approaching ....
cg-martini.bsky.social
Martini workshop registration now open !!!!
See cgmartini.nl for details and how to apply.
Looking forward to seeing you in Groningen, Aug 11-15th.
Reposted by VIAMD
bioexcelcoe.bsky.social
Get inside a bacterial cell with this cool combination of @cg-martini.bsky.social and @viamd.bsky.social

Also check out our recent webinars on each:

🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90

🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
Reposted by VIAMD
cg-martini.bsky.social
MA(R/S)TINI 3: An Enhanced Coarse-Grained Force Field for Accurate Modeling of Cyclic Peptide Self-Assembly and Membrane Interactions | Journal of Chemical Theory and Computation pubs.acs.org/doi/full/10....
pubs.acs.org
Reposted by VIAMD
Reposted by VIAMD
veloxchem.bsky.social
In addition to our website veloxchem.org, we are now opening the discussion on github, this is the place to exchange and ask questions about veloxchem (github.com/orgs/VeloxCh...). #compchem
veloxchem.org
Reposted by VIAMD
Reposted by VIAMD
lumi-supercomputer.eu
🔬 Into quantum chemistry + HPC?
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD

Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
New course available. Register today!
viamd.bsky.social
New feature! You can now visualize trajectories with bond formation and breaking by checking the Recalc Bonds option. #compchem
viamd.bsky.social
Learn how to create a dynamic selection and count its component in function of time: youtu.be/VhJyMkgYIkE?.... #compchem
VIAMD - Dynamic Selection and Counting
YouTube video by mathieu linares
youtu.be
viamd.bsky.social
Learn how to calculate properties and visualize them in the timeline and distribution window. youtu.be/7bqsg3GFly8?... #compchem
VIAMD - Timeline, Distribution, Visual Feedback and Filtering
YouTube video by mathieu linares
youtu.be
viamd.bsky.social
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
VIAMD - Quick Overview
YouTube video by mathieu linares
youtu.be
viamd.bsky.social
Hi #compchem people of Bluesky. Follow us for updates on our latest developments.