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alignbio.bsky.social
The Align Foundation
@alignbio.bsky.social
Improving life science with programmable experiments. 🧬 🤖 Home of the Protein Engineering Tournament & Open Datasets Initiative.
Designed to be scalable and with closed-loop experimentation, Tesseract will power AI to map sequence → function, predict gene transfer success, and assign function to unknown genes from rich phenotypic signatures.

Big thanks to all the collaborators and reviewers who helped shape this proposal!
January 15, 2026 at 3:18 PM
5/5
We understand this may cause inconvenience, and we appreciate your patience and continued support as we work to deliver a high-quality, impactful Tournament. For any questions or concerns, please contact us at [email protected]
October 15, 2025 at 4:47 PM
4/5
The new timeline is as follows:

-Registration deadline: Nov. 14th 2025

Predictive phase:
-Zero-shot track: Dec. 1st 2025 to Jan. 16th 2026
-Supervised track: Jan. 26th to Feb. 20th 2026

Generative phase:
-Round-1: Mar. 9th to Apr. 3rd 2026
-Round-2: Jul. 20th to Aug. 14th 2026
October 15, 2025 at 4:47 PM
3/5
The Tournament will establish the first-of-its-kind benchmark for predictive and generative AI/ML models in engineering PETases. We remain committed to enabling real-world, transparent, and accessible benchmarking competitions, and this adjustment is to uphold that commitment.
October 15, 2025 at 4:47 PM
2/5
This additional time will allow us to:
•Complete the generation of a high-quality training dataset 🧬🧪
•Secure the best sponsorships to expand access to the Tournament 🖥️💪
•Register more participants 👥🚀
October 15, 2025 at 4:47 PM
Register before Oct. 17 👉 alignbio.org/get-involved...
More about EvolutionaryScale’s API (Forge) 👉 forge.evolutionaryscale.ai
August 21, 2025 at 4:13 PM
4/4
What’s coming:
→ More protein functions
→ Sharper ML strategies
→ Public data access portal
→ And yes—we’re hiring.
🔗 alignbio.org/careers
#openbiology #machinelearning #proteinfunction #bioengineering
Careers — Align to Innovate
alignbio.org
July 21, 2025 at 2:59 PM
3/4
GROQ-seq is designed for reproducibility.
Standardized assays + distributed data collection = a foundation for robust, ML-ready protein function data.

Next: scale up function types, refine ML pipelines, expand access.
July 21, 2025 at 2:59 PM
2/4
🧪 Year One in brief:
Started onboarding 6 protein function types
Launched multi-site runs at NIST + DAMP Lab
Achieved 100K–500K variant throughput per run
Standardized, modular, reproducible, open-source
📘 Full report: doi.org/10.5281/zeno...
Year One Report: Growth-based Quantitative Sequencing (GROQ-Seq) Platform
This report summarizes the first year of development and deployment of the Growth-based Quantitative Sequencing (GROQ-seq) platform, a pooled functional assay pipeline for large-scale, reproducible me...
doi.org
July 21, 2025 at 2:59 PM
🔗 Sign up by Oct 17 → bit.ly/Tournament25
🔗 Want to read more? Last year’s amalyase engineering competition was recently published in PROTEINS: onlinelibrary.wiley.com/doi/10.1002/...
#AIforBiology #ProteinDesign #ClimateTech
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
4/4
🏆 Why join?:
• $30K in cash prizes
• Free DNA synthesis + wet lab testing
• Leaderboard visibility
• Publication in a special issue of Proteins
• Sponsored conference presentations
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
3/4
The tournament has two phases:

🔹 *Predictive* (Nov 3 – Dec 23):
Predict PETase sequence properties
🔹 *Generative* (Jan 5 – Apr 10): Design novel sequences to maximize enzyme activity.

Every submission is synthesized and tested.
July 8, 2025 at 4:27 PM
2/4
This is a *lab-validated* benchmark competition for real protein function.

The winner will be determined by experiment. We’ll test:

🔥 Enzymatic activity at high temperatures
🧬 Protein expression
Results go straight to the leaderboard.

🔗 Register by Oct. 17: bit.ly/Tournament25
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
Read the news release here: alignbio.org/pressrelease...
June 18, 2025 at 2:00 PM
🧬 Growth + morphology data across diverse conditions
🔗 Linked to genome references with robust metadata
📊 Built for ML training, benchmarking, reproducibility

🙌 Thx to Jensen Lab for their foundational work that helped enable this platform. Lean more here: alignbio.org/datasets-mic...
June 18, 2025 at 2:00 PM