Lightnews — Scholar-powered news

ayakimovich.bsky.social @ayakimovich.bsky.social · 7d

had a great time talking about #GenAI for improving microscopy at the #FoB @hzdr.bsky.social @casusscience.bsky.social

ayakimovich.bsky.social @ayakimovich.bsky.social · 8d

Always great to be back to #Basel, you might think that staying in hotel 2.7182.. is irrational, but the night rates are quite natural! #FoB here we go!

ayakimovich.bsky.social @ayakimovich.bsky.social · 16d

I'll be speaking at the Festival of Biologics 2025 in Basel next week. If you're interested, pass by and please pick up one of my FREE passes: i.snoball.it/p/IGqAE/l/7

#FestivalOfBiologics @hzdr.bsky.social @casusscience.bsky.social

Register for Festival of Biologics Basel 2025 | 30 September - 2 October, 2025

Europe's largest biologics event.

i.snoball.it

1

ayakimovich.bsky.social @ayakimovich.bsky.social · 20d

looking forward to talking about #Microscopy, #GenAI, and virological plaques at the 8th International Symposium on Systems Biology of Microbial Infection in beautiful Jena!

1

ayakimovich.bsky.social @ayakimovich.bsky.social · 27d

#BuildingBridges in Dresden! Excited to talk about #GenAI for #Microscopy tomorrow! @casusscience.bsky.social @hzdr.bsky.social

1 3

ayakimovich.bsky.social @ayakimovich.bsky.social · Aug 21

Had a blast discussing #microscopy and #AI at BNMI in beautiful Gothenburg!

1 3

ayakimovich.bsky.social @ayakimovich.bsky.social · Jul 11

I am happy to share that I have recently been invited and joined the editorial board of mSphere - a journal of the @asm.org journals.asm.org/journal/msph... @casusscience.bsky.social @hzdr.bsky.social

mSphere Board of Editors

Members of the mSphere Editorial Board

journals.asm.org

2

ayakimovich.bsky.social @ayakimovich.bsky.social · Jul 3

German railways maintain an unmatched level of backward compatibility! 🧑‍💻

2 3

ayakimovich.bsky.social @ayakimovich.bsky.social · Jun 30

Drop me a line if you're in sunny 😎 Manchester today/tomorrow @casusscience.bsky.social

2

ayakimovich.bsky.social @ayakimovich.bsky.social · Jun 29

Maybe it is time to rethink the big conferences... #AI

1

ayakimovich.bsky.social @ayakimovich.bsky.social · Jun 28

After #fluorescencefriday comes #superresolutionsaturday if you still can spell it!

2

Reposted by ayakimovich.bsky.social

Andrew L. Hufton @alhufton.bsky.social · Jun 24

I‘m looking forward to visiting the Center for Advanced Systems Understanding (#CASUS) tomorrow in Görlitz!

I will be giving a talk to CASUS and other @hzdr.bsky.social researchers at 14:00. Details: www.casus.science?page_id=15608

Event — Effectively publishing data-rich science – CASUS – Center for Advanced Systems Understanding

Andrew Hufton, Ph.D., Editor-in-Chief Patterns, Cell Press, Munich (Germany)

www.casus.science

1 2

ayakimovich.bsky.social @ayakimovich.bsky.social · Jun 19

Had a blast talking about #BioMed #AI at the International Urogynecological Association (IUGA) conference in beautiful Barcelona @hzdr.bsky.social @casusscience.bsky.social

1

Reposted by ayakimovich.bsky.social

MOSAIC Group / Sbalzarini Lab @mosaicgroup.bsky.social · Jun 8

🔥Just out @EGPGV’25: Parallel visualization of distributed volume data for non-convex decompositions! @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de And the best: code is contributed upstream 🤩 diglib.eg.org/items/3aed38...

A Transparent and Efficient Extension of IceT for Parallel Compositing on Non-Convex Volume Domain Decompositions

The IceT library is widely used for parallel compositing but does not support non-convex volume domain decompositions. We provide a backward-compatible extension of IceT to handle non-convex domain de...

diglib.eg.org

2 3

ayakimovich.bsky.social @ayakimovich.bsky.social · Jun 6

It never ceases to amaze me how much information we can get just by looking at the gradients in #BioImageAnalysis #AI #GenAI Kudos Ivo F. Sbalzarini and the group! 🧪 @mosaicgroup.bsky.social @hzdr.bsky.social @mpi-cbg.de @casusscience.bsky.social onlinelibrary.wiley.com/doi/10.1002/...

Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy

A generative AI model for super-resolution microscopy images is presented. Super-resolution microscopy provides high spatial detail at the expense of lower time resolution. Using it for live samples ...

onlinelibrary.wiley.com

3 6

ayakimovich.bsky.social @ayakimovich.bsky.social · May 28

Generation of a new #fluorescent reporter #virus could often take years! Here, we propose to use #AI #VirtualStaining to detect infection, by providing a #baseline and a #benchmark for #RV, #HAdV, #IAV, #HSV and #VACV. 🧪@casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41...

A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy - Scientific Data

Scientific Data - A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy

www.nature.com

1 2

ayakimovich.bsky.social @ayakimovich.bsky.social · May 21

Oh hello there @embl.org

1 3

ayakimovich.bsky.social @ayakimovich.bsky.social · May 15

I'll be giving a talk and taking part in a panel at @embl.org Heidelberg next Wednesday. Drop me a line if you have time for a ☕ #AI4Science @casusscience.bsky.social @hzdr.bsky.social 🧪

1 5

ayakimovich.bsky.social @ayakimovich.bsky.social · May 1

Conceived by Félix d’Herelle, plaque assay remains the cornerstone of #Virology and #Microbiology. In our recent work, we bring it to the era of #AI by collating mobile photos benchmark and proposing an e2e baseline @casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41... 🧪

A digital photography dataset for Vaccinia Virus plaque quantification using Deep Learning - Scientific Data

Scientific Data - A digital photography dataset for Vaccinia Virus plaque quantification using Deep Learning

www.nature.com

2 5

ayakimovich.bsky.social @ayakimovich.bsky.social · Apr 22

Was amazing to speak at the good old @uzh-ch.bsky.social

1

ayakimovich.bsky.social @ayakimovich.bsky.social · Apr 10

The lack of high-quality annotated #datasets is hampering applications of #AI in Optical #Microscopy. Let's change this together! I'm honored to be serving as the collection's Guest Editor. More in: go.nature.com/4hyDnNK 🧪 @natureportfolio.nature.com
@casusscience.bsky.social

@hzdr.bsky.social