carojachmann.bsky.social
Caroline Jachmann
@carojachmann.bsky.social
56 followers 85 following 1 posts
Predoctoral researcher at CompOmics Gent
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Reposted by Caroline Jachmann
compomics.com
CompOmics @compomics.com · Jun 16
From PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!
Plenary talk Lennart Martens Rise of the Robots – definitely artificial, somewhat intelligent Keynote lecture Tim Van Den Bossche Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox Oral presentations Harikrishnan Ramadasan Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 Robbe Devreese Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?) Robbin Bouwmeester Challenges and opportunities in modification searches for DIA proteomics Educational session Lennart Martens No more surprises: AI predictions in MS DDA and DIA data interpretation Robbin Bouwmeester A deep dive into limitations of modification searching for DIA data Caroline Jachmann Fantastic PTMs and how (not?) to find them using msqrob2PTM - a real-life journey Poster presentations Enrico Massignani Overcoming challenges in non-canonical protein searches with OpenProt and ionbot Pathmanaban Ramasamy Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability Toon Callens Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration Tine Claeys MLMarker: Data-driven discovery of tissue similarity and biomarkers Alireza Nameni Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates Tim Van Den Bossche The Metaproteomics Initiative: An international community by and for metaproteomics researchers Award presentations Tine Claeys Bioinformatics Award Tim Van Den Bossche Vision & Commitment Award
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Reposted by Caroline Jachmann
robbedevr.bsky.social
Robbe Devreese @robbedevr.bsky.social · Feb 23
🚀 New preprint alert! We've improved IM2Deep for accurate peptide collisional cross-section (CCS) prediction, even for peptides exhibiting multiple conformations in the gas phase! 🎯

Check it out here:

www.biorxiv.org/content/10.1...
Collisional cross-section prediction for multiconformational peptide ions with IM2Deep
Peptide collisional cross-section (CCS) prediction is complicated by the tendency of peptide ions to exhibit multiple conformations in the gas phase. This adds further complexity to downstream analysi...
www.biorxiv.org
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carojachmann.bsky.social
Caroline Jachmann @carojachmann.bsky.social · Jan 21
Do you want to explore the PTMs you identified in your last MS experiment in a fun, interactive way? Try it out on our PTMVision web server at ptmvision-tuevis.cs.uni-tuebingen.de and check out the new publication in JPR at doi.org/10.1021/acs....!
PTMVision
PTMVision: Interactive Visualization of Post Translational Modifications | Understanding the intricate landscape of post-translational modifications (PTMs) is crucial for unraveling the co...
ptmvision-tuevis.cs.uni-tuebingen.de
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Reposted by Caroline Jachmann
tineclaeys.bsky.social
Tine Claeys @tineclaeys.bsky.social · Jan 7
🚨 Big news, #TeamMassSpec! 🚨
How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI?
Find out at HUPO-PSI Spring Meeting 2025!

📅 March 31 – April 3, 2025
📍 Tübingen, Germany
(1/4)
HUPO-PSI Spring Meeting 2025 – HUPO Proteomics Standards Initiative
psidev.info
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Reposted by Caroline Jachmann
compomics.com
CompOmics @compomics.com · Dec 6
Today, @robbedevr.bsky.social and @carojachmann.bsky.social presented their work on #IM2Deep and #ProteoBench at #BePAc2024.

Learn more at doi.org/10.1101/2024... and proteobench.readthedocs.io.
Caroline Jachmann presenting her work in front of the BePAc 2024 audience Robbe Devreese presenting his work at BePAc 2024
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