christinehe.bsky.social
Christine He
@christinehe.bsky.social
73 followers 140 following 4 posts
Bioinformatics at Oxford Nanopore Technologies 🧬 Microbe enthusiast 🦠 Previously Invitae, One Codex, IGI at UC Berkeley
Posts Media Videos Starter Packs
christinehe.bsky.social
Christine He @christinehe.bsky.social · Aug 27
ONT has a temporary bioinformatics position (8 months) open while I'm on maternity leave. Focus will be on microbial genomics but with opportunities to work on projects across the breadth of genomics!
ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
Applications Bioinformatician (8 month temporary role)
We are looking for an individual with expertise in bioinformatics and data analysis, specializing in microbial genomics and metagenomics, to join our Applications team as an Applications Bioinformatic...
ejnh.fa.em2.oraclecloud.com
3 3
christinehe.bsky.social
Christine He @christinehe.bsky.social · Jul 17
An ONT webinar where I discuss wet and dry lab methods for environmental metagenomics, as well as analysis of 1.5 Tb (!!) of metagenomic sequencing from compost. Featuring the nanoMDBG assembler, strain-dependent AMR profiles, and invertons:
www.youtube.com/watch?v=OZ4P...
Exploring Oxford Nanopore sequencing methods for environmental samples
YouTube video by Oxford Nanopore Technologies
www.youtube.com
1 8
christinehe.bsky.social
Christine He @christinehe.bsky.social · Feb 7
I believe this is the intended page: register.nanoporetech.com/grants-progr...
Grant programme application | Oxford Nanopore
Oxford Nanopore’s Grant Programme offers affordable access to MinION Mk1D and PromethION 2 Solo packs, empowering researchers worldwide.
register.nanoporetech.com
christinehe.bsky.social
Christine He @christinehe.bsky.social · Jan 21
Our guide for best practices in metagenomic assembly and binning of @nanoporetech.com data, highlighting some exciting recently developed tools for high accuracy long reads
dorylophile.bsky.social
Sean McKenzie @dorylophile.bsky.social · Dec 19
Check out our new Apps Note on metagenomic assembly of the Zymo fecal reference with nanopore sequencing and metaMDBG. Almost 200 Gb of metagenomic sequence data from a single PromethION flowcell, yeilding hundreds of high-quality metagenome assembled genomes: nanoporetech.com/resource-cen...
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome | Oxford Nanopore Technologies
In this application note, we demonstrate the capabilities of Oxford Nanopore metagenomics by sequencing and analysing the well-characterised ZymoBIOMICS Fecal Reference.
nanoporetech.com
1 3 6
Reposted by Christine He
agdr.org
Austin Richardson @agdr.org · Dec 13
NCBI's Taxonomy changes over time. We built Taxonomy Time Machine to track these changes:

🕰️ app: taxonomy.onecodex.com
📄 pre-print: www.biorxiv.org/content/10.1...
A screenshot of a webpage titled "Taxonomy Time Machine" showing the taxonomic lineage and descendants of the Influenza A Virus
7 17