Felipe Cybis Pereira
@felipecybis.bsky.social
38 followers 74 following 6 posts
PhD student @physmedparis.bsky.social and @Iconeus on functional Ultrasound imaging in freely-moving 🐁. Engineer degree from @UFSC 🇧🇷 and @ESPCI_Paris 🇫🇷
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Reposted by Felipe Cybis Pereira
gozziale.bsky.social
This looks pretty cool: ultrasound can now see through the skull! 🧠🔊

The skull has long been a barrier to ultrasound. This reprint shows how to make it quickly transparent → enabling full-depth, high-res fUSI in mice (& humans! 🤯🤯)
Huge congrats to the authors!!!

www.biorxiv.org/content/10.1...
Reposted by Felipe Cybis Pereira
gaelvaroquaux.bsky.social
Our didactic review on machine learning for causal inference, now open access:
• identifiability (theory of when the data can answer a causal question)
• machine-learning estimators
• study design (asking well-framed questions + loopholes, eg with timewise data)
www.annualreviews.org/content/jour...
felipecybis.bsky.social
Thanks to @physmedparis.bsky.social @iconeus.bsky.social @mickaeltanter.bsky.social and Sophie Pezet as well as all my other incredible co-authors!
felipecybis.bsky.social
We tackle energy consumption modeling for path integration using fUSI data and, finally, fUS minute-scale oscillations vs. minute-scale behavior.
felipecybis.bsky.social
Other behavioral correlates do appear, but not as striking as animal speed.

Metrics for decoding continuous locomotion speed with fUSI data match decoding results using standard ephys methods (for speed cells or theta freq, for example).
felipecybis.bsky.social
We show that robust spatiotemporal correlation patterns appear when comparing relative cerebral blood volume with continuous animal speed. These patterns start from dorso-thalamic nuclei than go to parahippocampal regions (MEC, PaS, PrS…) to finally peak in the hippocampus proper (CA1, CA3).
felipecybis.bsky.social
🚨 Preprint alert 🚨
The main results of my PhD are online and I only now could find some time to post about it!

We explored the neurovascular activations of spatial navigation by using functional ultrasound imaging (fUSI) in freely moving rats during open field.
Reposted by Felipe Cybis Pereira
thomasandrillon.bsky.social
We need your help!!! 🧠🧪💤

If you are human, you fall asleep at least once a day! What happens in your mind then?

Scientists know actually very little about this private moment.

We propose a 20-min survey to get as much data as possible!

Here is the link:
redcap.link/DriftingMinds
felipecybis.bsky.social
Enormous amount of work put into it by @sdiebolt.bsky.social! Glad to be part of it :)
sdiebolt.bsky.social
🚨 New preprint alert!

We benchmarked 792 denoising pipelines for #fUSI in awake mice 🐭🧠

Our results show how they reduce motion artifacts and impact seed-based connectivity analyses.

Check it out on @biorxivpreprint.bsky.social 👇
🔗 www.biorxiv.org/content/10.1...
www.biorxiv.org
Reposted by Felipe Cybis Pereira
sdiebolt.bsky.social
🚨 New preprint alert!

We benchmarked 792 denoising pipelines for #fUSI in awake mice 🐭🧠

Our results show how they reduce motion artifacts and impact seed-based connectivity analyses.

Check it out on @biorxivpreprint.bsky.social 👇
🔗 www.biorxiv.org/content/10.1...
www.biorxiv.org
Reposted by Felipe Cybis Pereira
Reposted by Felipe Cybis Pereira
physmedparis.bsky.social
#fUSbrain DAYS 2025 | Last call for registration!
Registrations will close on May 31st! Don't miss your chance to join us on June 19&20 in Paris, for two days dedicated to functional ultrasound neuroimaging!
👉 Check the detailed program and register here www.physicsformedicine.espci.fr/fusbrain2025
fUSbrain #DAYS 2025 | Physics for Medicine Paris
www.physicsformedicine.espci.fr
Reposted by Felipe Cybis Pereira
gozziale.bsky.social
🎓 My lab has 2 PhD positions with @cimecunitrento.bsky.social
1️⃣ 🧠 Watch the 🐭 brain in motion, with functional ultrasound imaging (fUSI)
2️⃣🧪 Mess with the 🐭 brain (experimentally) via causal perturbations + imaging

🔬 Neuro/physics/bioengeneering backgrounds welcome
👉Info ▶️https://lnkd.in/dDeTTDj2
Reposted by Felipe Cybis Pereira
alexandredizeux.bsky.social
Illustration done for the first publication of my colleague Nicolas Zucker. He managed to measure heart and breathing rate by monitoring tissue motion in the brain using ultrasound, what a crazy idea ! #sciart 🐡 #scicomm 🧪 #neuroscience 🧠🫀🫁🤯
A non realistic illustration in which some researchers are working around a brain at least 5 times bigger than a human. They are positioning an ultrasound probe on the top to measure heart and breathing rate. We see literally, heart and lungs inside the brain.
Reposted by Felipe Cybis Pereira
jcmariani.bsky.social
Hey fUSI users. As you were well aware, the next meeting on fUSI-BIDS, our soon to be data sharing standard, is happening next week 12/02 4pm CET. Please join us (details in the doc docs.google.com/document/d/1...) to discuss bidsification, metadata and share your opinion before your data 😉
fUS-BIDS extension proposal v0.0.9
BIDS Extension Proposal 40 (BEP040): fUS-BIDS version 0.0.10 Available under the CC-BY 4.0 International license. Extension moderators/leads: Jean-Charles Mariani <[email protected]>,...
docs.google.com
Reposted by Felipe Cybis Pereira
physmedparis.bsky.social
Join us at fUSbrain #DAYS, a workshop on ultrasound neuroimaging, in 19-20/06/2025 in Paris. Submit your abstract on www.physicsformedicine.espci.fr/fusbrain2025
Organized by PhysMedParis, with the support of Iconeus.
@inserm.fr @espciparispsl.bsky.social @psl-univ.bsky.social @cnrs.bsky.social
Reposted by Felipe Cybis Pereira