Erik Poppleton
@floppleton.bsky.social
990 followers 900 following 710 posts
Postdoc working on RNA Nanotech & MD simulations @uniheidelberg.bsky.social & MPIP. GROMACS wrangler, oxDNA developer, @molpigs.bsky.social podcast host, and all around weird lil guy. Has been known to post about music and neat bugs found in the woods.
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floppleton.bsky.social
Are there any other scientists from molecular programming here? That's self-assembly, chemical computation, rational design et al. I made a mol pro feed which works like the Science (🧪) feed. Let me know, I add you to the list, you post with a 🧬 emoji. Let's assemble!

bsky.app/profile/flop...
floppleton.bsky.social
They can be re-purposed for research usage, they’re the same kind of GPUs used in things like weather prediction, drug design, and data analysis. But that requires the capital to buy up the hardware when the AI companies fall apart, which research institutes are currently struggling with.
floppleton.bsky.social
This really is part of the joy of science! I love hunting down papers from the early days of biochemistry or molecular biology and seeing the methods, the thought processes, and feeling the continuity with great names from the past.
Reposted by Erik Poppleton
ryanmarino.bsky.social
This is why we fund scientists to study things like oyster slobber even if you don’t think it sounds important
leahmcelrath.bsky.social
⚠️ Chinese researchers have invented bone glue that mimics how oysters stick to surfaces underwater.

The adhesive can reportedly repair orthopedic fractures in 2-3 minutes, even in blood-rich environments, and is bioabsorbable.

interestingengineering.com/science/chin...
China's oyster-inspired 'bone glue' bonds fractures in minutes
A new oyster-inspired Bone-02 adhesive can revolutionize bone repair without metal fasteners.
interestingengineering.com
floppleton.bsky.social
Oof, this is gnarly! Thanks for sharing.
floppleton.bsky.social
When you put it that way, I suppose what I’m asking for isn’t so different than what attention does with the tokens themselves.
floppleton.bsky.social
Has there been any research on ‘fuzzy’ tokenizers? The reason we can mentally combine ‘going to’ and ‘gonna’ is because of this map between words and sound which lets those co-exist, while ‘boing to’ would be different. Probably too much processing power in the tokenizer layer for that to work tho.
floppleton.bsky.social
Also, I added you to the Molecular Programming feed posting list. If you include a 🧬 emoji in your posts, they should get picked up by the feed:

bsky.app/profile/did:...
floppleton.bsky.social
This is great! Would love to see if this method could be used to get the stacking energies of the inverted A|A stack in the kissing loops used in RNA origami.
floppleton.bsky.social
Some really nice fundamental biophysics of DNA base stacking 🧬!
halvorsenlab.bsky.social
Well, it's been a minute but we have a new preprint to share! Final project in our lab by @jibinpunnoose.bsky.social, investigating strand polarity in base stacking. We measured experimentally with centrifuge force microscope and computationally with MD.

www.biorxiv.org/content/10.1...
Reposted by Erik Poppleton
annamerlan.bsky.social
Anyway, learning another language is good for you because you die a thousand deaths of embarrassment and then you come out more humble and even more aware of your various human failings
floppleton.bsky.social
This is sad news… it was such a cool museum when everything was working properly (which as you can read in the piece, it often wasn’t). I particularly liked the “living art” in the atrium.
Reposted by Erik Poppleton
rebeccarhelm.bsky.social
I get that the news cycle is packed right now, but I just heard from a colleague at the Smithsonian that this is fully a GIANT SQUID BEING EATEN BY A SPERM WHALE and it’s possibly the first ever confirmed video according to a friend at NOAA

10 YEAR OLD ME IS LOSING HER MIND (a thread 🧵)
Reposted by Erik Poppleton
franknoe.bsky.social
Postdoc position available in the BioEmu team at @msftresearch.bsky.social AI for Science - Berlin DE or Cambridge UK. Looking for candidates with backgrounds in #MachineLearning #AI Biophysics or Bioinformatics

jobs.careers.microsoft.com/global/en/jo...
floppleton.bsky.social
I have it in my big annual new releases playlist and sometimes find it super grating and have to skip, but other times that loudness is exactly what my brain wants and it’s energizing. Different mixes for different days, I guess.
floppleton.bsky.social
Yeah, that production is really loud and flat. Could have used some time in the sauna.
floppleton.bsky.social
So this is what getting a lobotomy feels like (laudatory)
floppleton.bsky.social
Were they trying to loose?? Authenticity is what always wins the day in these contests.
floppleton.bsky.social
This was something @englishhistpod.bsky.social brought up in episodes about the 1500s as well! By that point English was already splitting into three registers based on vocabulary (largely Anglo-Saxon, largely French, largely Latin).
floppleton.bsky.social
Ahh, wait, I get it! “MJ” stands for Midjourney. That account used to post AI re-interpretations of art pieces and historical artifacts.
floppleton.bsky.social
Idk what the images in that post are, but they’re not the Orkney Hood. You can see the actual hood in its exhibit in this video. Alas it isn’t nearly as cool.

youtu.be/Y5KveU3OC5c?...
The Orkney Hood in the National Museum of Scotland
YouTube video by NationalMuseumsScotland
youtu.be
floppleton.bsky.social
Why does this keep happening??
Screenshot of a Bluesky post containing a screenshot of a Reddit post saying “The Hatman does NOT respect gender pronouns past 450mg” in a quote post of Melania Trump looming in a hat.
floppleton.bsky.social
These graphs make no sense…

Student migration should be relatively constant because there’s only a certain number of seats at universities. So how are there more student visas being issued in 2025 than all types of migration combined pre-2021? Am I missing something?
Reposted by Erik Poppleton
floppleton.bsky.social
What are those numbers relative to? Shouldn’t the angle be 0-135 or so?
Reposted by Erik Poppleton
lenasteckelberg.bsky.social
So excited to see our newest study out in print! Led by the brilliant @jgezelle.bsky.social and @sophiekorn.bsky.social, we discovered how viruses from highly divergent families converge on a shared RNA structure mechanism to inhibit cellular nucleases. #RNAsky #LoveVirology
jgezelle.bsky.social
Our study from the Steckelberg lab is out now in @narjournal.bsky.social !! We dove into a new nuclease-blocking viral #RNA structure important for viral infection, which provided evidence of similar structure-based strategies across diverse viral families. academic.oup.com/nar/article/...
A conserved viral RNA fold enables nuclease resistance across kingdoms of life
Abstract. Viral exoribonuclease-resistant RNA (xrRNA) structures block cellular nucleases to produce subgenomic viral RNAs during infection. High sequence
academic.oup.com