We've just released a new version of @germinate.hutton.ac.uk with lots of new features. Check them out in the thread 🧵:
#pgr #webdev #boldcwr #phenotyping

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germinate.hutton.ac.uk

This release also fixes issues on iOS devices where date-based traits sometimes auto-selected the current date. This is an iOS issue, but a new setting to prevent auto progression prevents this.
We have also fixed issues with trait deletion and export format issues.

When exporting in the long-format, you can now include more information about each individual data point. This includes a full timestamp (rather than just the date), the position of this measurement in the set and the person who collected each data point.

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Add even more information to each plot by providing treatment, pedigree or a friendly name.
These provide more information to the person collecting the data.

You can also assign a dedicated barcode for each plot that isn't the same as the germplasm name! This helps keep barcode tags shorter.

2/4

It's update day for #GridScore 🎉
This release includes improvements to:
📝 Add pedigree, treatment, friendly name and barcode info to plots
💾 Include more information in long-format exports
🍎 Prevent automatic date selection on iOS devices
🐞 Bugfixes

#phenotyping #BOLDcwr
gridscore.hutton.ac.uk

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We've been working on a small tool for vegetation index estimation from RGB images called Spriggles

🔲 Select area of interest
📝 Export into Excel
📑 If images are taken with #GridScore, export your data straight back into the GridScore trial

#phenotyping #webdev #rse

cropgeeks.github.io/spriggles

First signs of germination!
#seeds #potato #biodiversity

#potato #biodiversity #horticulture

@pauldshaw.bsky.social speaks at the #BreedingValue workshop on advanced #berry breeding and the important part #Germinate plays in the data aggregation and distribution.

Follow along this season for an exclusive behind-the-scenes look at the inner workings of the Commonwealth Potato Collection.

#potato #biodiversity

The update is here! Now you can score two plots at a time, export any visualization to PNG and SVG format, utilise barcodes even better and export more data via #BrAPI

#phenotyping #bioinformatics #webdev

gridscore.hutton.ac.uk

Finally, we've added another data aggregation view to the statistics page that highlights the contribution of each project partner to the overall database. This both showcases data origins as well as giving credit to all collaborators.

5/5

The content of certain pages of Germinate can now be edited straight through the interface in a live editor to allow for easier modification.

4/5

Based on the #BreedingValue project, we've added new trait data visualizations in the form of radar, bubble and heatmap charts for scale-type traits to highlight the differences or performance of individual germplasm.

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Project support adds another level of data granularity allowing you to group together experiments, publications, collaborators and groups generated or involved in a project along with detailed information about the project itself.

2/5

Today, we're releasing a new version of #Germinate with a long list of improvements focusing on trait definitions, trait data visualization, project support and general user experience improvements.
#pgr #bioinformatics

germinate.hutton.ac.uk

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Learn more about the work we are doing at The James Hutton Institute as part of the EU funded BREEDING VALUE project. Here @bazraubach.bsky.social talks about the work he is doing to help fruit researches store their experiemtal data using @germinate.hutton.ac.uk.

breedingvalue.eu/the-germinat...

Join our #BreedingValue webinar tomorrow morning at 9:30am GMT where @bazraubach.bsky.social will talk about the work we have been doing at @jameshuttoninst.bsky.social on creating a central @germinate.hutton.ac.uk database to store experiemental data. More info www.breedingvalue.eu/news/webinar...