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in silico Plants @insilicoplants.bsky.social · 1h

by Maleana G Khoury, Kenneth S Berenhaut, Katherine E Moore, Edward E Allen, Alexandria F Harkey, Joëlle K Mühlemann, Courtney N Craven, Jiayi Xu, Suchi S Jain, David J John, James L Norris, Gloria K Muday

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in silico Plants @insilicoplants.bsky.social · 1h

New algorithm address the challenge of inferring GRNs from time series transcriptome data. This approach generates cohesive networks with minimal user input, revealing biologically meaningful neighborhoods.
doi.org/10.1093/insi... #PlantBiology #Transcriptomics #GRN

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in silico Plants @insilicoplants.bsky.social · 2h

Learn more at academic.oup.com/insilicoplan...

Instructions to Authors

in silico Plants is an international Open Access online journal. Published articles are fully peer reviewed and are available to anyone, anywhere free of charge

academic.oup.com

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in silico Plants @insilicoplants.bsky.social · 2h

📢 We're Now Accepting Commentaries
These are short discussion on current topics involving computational algorithms, software, models, frameworks, engines, languages and other tools that advance plant sciences.

Publishing is free, but please reach out with a pre-submission inquiry. #PlantScience

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in silico Plants @insilicoplants.bsky.social · 2h

Simulating C3-to-CAM transition under ancient atmospheric conditions
by Devlina Sarkar & Sudip Kundu
doi.org/10.1101/2025... via @biorxiv-plants.bsky.social #PlantScience

in silico Plants @insilicoplants.bsky.social · 22h

Check out starter pack I: go.bsky.app/KcVXefi

in silico Plants @insilicoplants.bsky.social · 22h

The starter pack consists of scientists involved in developing computational algorithms, software, models, and tools to advance plant sciences including mathematics, computer science, omics, plant biology, crop science, ecology, and forestry.

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in silico Plants @insilicoplants.bsky.social · 22h

🎉The Plant modelling scientists I starter pack has reached the maximum number of users!
Check out Plant modelling scientists II at go.bsky.app/NXSvwf7
Leave a comment below if you'd like to be added.

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in silico Plants @insilicoplants.bsky.social · 1d

by @DirkHelmrich Felix Maximilian Bauer, Mona Giraud, Andrea Schnepf, Jens Henrik Göbbert, Hanno Scharr, Ebba Þora Hvannberg, Morris Riedel

in silico Plants @insilicoplants.bsky.social · 1d

Introducing Synavis, a framework that generates synthetic data for training deep learning models using #UnrealEngine
doi.org/10.1093/insi... #PlantScience #DeepLearning #CPlantBox

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in silico Plants @insilicoplants.bsky.social · 1d

This is a Methods for Plant Modeling article
These articles describing software, tools, models, and other resources in an accessible way, making them suitable for educational use. See more at: academic.oup.com/insilicoplan...

in silico Plants @insilicoplants.bsky.social · 1d

NEW!
Predicting plant thermal responses using a temperature-aware plant metabolic model: A primer
by Philipp Wendering & Zoran Nikoloski
doi.org/10.1093/insi... #PlantScience

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in silico Plants @insilicoplants.bsky.social · 2d

by Hamish Brown, John McCallum, Paul Johnston, Meeghan Pither-Joyce, Richard Macknight, Neil Huth, Derrick Moot, Bangyou Zheng, Zhigan Zhao and Enli Wang

in silico Plants @insilicoplants.bsky.social · 2d

Integrating molecular and physiological approaches to quantify genetic controls for #wheat development and improve #phenotyping
doi.org/10.1101/2025... @biorxiv-plants.bsky.social #PlantScience

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in silico Plants @insilicoplants.bsky.social · 2d

by Serena Lotreck, Kenia Segura Abá, Melissa D Lehti-Shiu, Abigail Seeger, Brianna N I Brown, Thilanka Ranaweera, Ally Schumacher, Mohammad Ghassemi, Shin-Han Shiu

in silico Plants @insilicoplants.bsky.social · 2d

Discover the Plant Science Knowledge Graph Corpus, molecular plant science abstracts annotated with entities and relations. Check it out here: doi.org/10.1093/insi... #PlantScience #MolecularBiology #ResearchData

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in silico Plants @insilicoplants.bsky.social · 5d

by Ha Rang Shin, Yu Hyun Moon, Ha Seon Sim, Tae Yeon Lee, Soo Bin Jung, Yong Jun Kim, Na Kyoung Kim, JinWoo Lee, Tae Hyun Kim, Seunghyun Ban, Sung Kyeom Kim

in silico Plants @insilicoplants.bsky.social · 5d

Simulation of dry matter partitioning in #cucumber fruits: reflecting gas exchange characteristics based on leaf position and cropping type
via doi.org/10.1093/hr/u... via Horticulture Research #photosynthesis #plantScience

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in silico Plants @insilicoplants.bsky.social · 5d

by Achraf Mamassi, Marie Lang, Bernard Tychon, Mouanis Lahlou, Joost Wellens, Mohamed El Gharous, Hélène Marrou

in silico Plants @insilicoplants.bsky.social · 5d

🌾🌧️ Analyzing empirical vs. mechanistic approaches for predicting #wheat harvests at the field level in Morocco's rainfed regions. Discover more: doi.org/10.1093/insi...

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in silico Plants @insilicoplants.bsky.social · 6d

☀️ 🌾 Using e-Photosynthesis to predict optimal protein allocation for maximum carbon assimilation in rice
by @svijayakumar32.bsky.social Yu Wang, Hsiang Chun Lin @ecarmosilva.bsky.social Stephen Long and Samuel Taylor
doi.org/10.1093/insi... #photosynthesis #PlantScience

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in silico Plants @insilicoplants.bsky.social · 6d

This is a joint international conference bringing together:
-The 8th International Symposium on Plant Growth Modeling, Simulation, Visualization, and Applications
-The 11th Conference on the Development and Application of Agricultural Models
-The 3rd Conference on Agricultural and Rural Big Data

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in silico Plants @insilicoplants.bsky.social · 6d

We are a proud sponsor of Joint International Conference on Crop/Plant Modeling, Big Data and Applications being held 2-6 Nov 2025 in Nanchang, China

modeldata2025.casconf.cn

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in silico Plants @insilicoplants.bsky.social · 6d

by @hebente.bsky.social Ronja Lea Jennifer Müller, Andreas Donath, Dirk Walther and Claudia Köhler

in silico Plants @insilicoplants.bsky.social · 6d

Samplify: A versatile tool for image-based segmentation and annotation of seed abortion phenotypes
doi.org/10.1101/2025... via @biorxiv-plants.bsky.social #PlantScience #Phenotyping

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