Giulio Ermanno Pibiri
@jermp.bsky.social
Associate Prof. of CS at Ca' Foscari University of Venice. Indexing, Data Compression, Algorithms.
DSB 2026 is organized by the RAVEN (Research on Algorithms VENice) research group at Ca' Foscari University of Venice, raven-laboratory.github.io.
Looking forward to seeing you in Venice!
Looking forward to seeing you in Venice!
About
Research on Algorithms VENice
raven-laboratory.github.io
December 10, 2025 at 2:29 PM
DSB 2026 is organized by the RAVEN (Research on Algorithms VENice) research group at Ca' Foscari University of Venice, raven-laboratory.github.io.
Looking forward to seeing you in Venice!
Looking forward to seeing you in Venice!
We are less than 1 month away from abstract submission!
**REGISTRATION** HERE: forms.gle/V9yrUXYvAsTP...
Registrations will be open until January 31st, 2026.
**ABSTRACT SUBMISSION** HERE: forms.gle/baHkDCZW1Lvx...
Submissions of abstracts for an oral presentation are open until January
2nd, 2026.
**REGISTRATION** HERE: forms.gle/V9yrUXYvAsTP...
Registrations will be open until January 31st, 2026.
**ABSTRACT SUBMISSION** HERE: forms.gle/baHkDCZW1Lvx...
Submissions of abstracts for an oral presentation are open until January
2nd, 2026.
DSB 2026 - Registration
forms.gle
December 10, 2025 at 2:29 PM
We are less than 1 month away from abstract submission!
**REGISTRATION** HERE: forms.gle/V9yrUXYvAsTP...
Registrations will be open until January 31st, 2026.
**ABSTRACT SUBMISSION** HERE: forms.gle/baHkDCZW1Lvx...
Submissions of abstracts for an oral presentation are open until January
2nd, 2026.
**REGISTRATION** HERE: forms.gle/V9yrUXYvAsTP...
Registrations will be open until January 31st, 2026.
**ABSTRACT SUBMISSION** HERE: forms.gle/baHkDCZW1Lvx...
Submissions of abstracts for an oral presentation are open until January
2nd, 2026.
The workshop "Data Structures in Bioinformatics" is an annual scientific meeting at the crossroads of CS and biology. It is a unique forum to discuss compact data structures and algorithms in the
context of data processing for the life sciences. More details on DSB at dsb-meeting.github.io
context of data processing for the life sciences. More details on DSB at dsb-meeting.github.io
DSB
Workshop Data Structures in Bioinformatics
dsb-meeting.github.io
December 10, 2025 at 2:29 PM
The workshop "Data Structures in Bioinformatics" is an annual scientific meeting at the crossroads of CS and biology. It is a unique forum to discuss compact data structures and algorithms in the
context of data processing for the life sciences. More details on DSB at dsb-meeting.github.io
context of data processing for the life sciences. More details on DSB at dsb-meeting.github.io
Fantastic news Ragnar! Can't think of any better group for you :)
December 9, 2025 at 8:56 PM
Fantastic news Ragnar! Can't think of any better group for you :)
Congratulations Zamin!!
November 16, 2025 at 8:46 AM
Congratulations Zamin!!
Beautiful! Let’s see what he has to say then…
October 25, 2025 at 10:15 PM
Beautiful! Let’s see what he has to say then…
Ahah yes! Unforgettable!
October 25, 2025 at 9:03 PM
Ahah yes! Unforgettable!
He replied to Rob on ycombinator 😂 insane… he still does not get it.
October 25, 2025 at 8:46 PM
He replied to Rob on ycombinator 😂 insane… he still does not get it.
There we go! github.com/jermp/pthash... 😂
Question about a needed mapping table, wrong sizes. · Issue #80 · jermp/pthash
Since the lookup function creates a return value which is not the original index of the key, but instead into a sorted table, we need this sorted table also to get the index into the original keys....
github.com
October 25, 2025 at 4:03 PM
There we go! github.com/jermp/pthash... 😂
Cool! Didn’t know :)
October 2, 2025 at 5:53 PM
Cool! Didn’t know :)
what conf are you attending?
October 2, 2025 at 3:11 PM
what conf are you attending?
Very strange that ArXiv did not accept this review paper. I also recently (some months ago) uploaded a survey on ArXiv and the process went smooth. I suspect there must be other reasons for their decision…
September 28, 2025 at 12:05 PM
Very strange that ArXiv did not accept this review paper. I also recently (some months ago) uploaded a survey on ArXiv and the process went smooth. I suspect there must be other reasons for their decision…
If I remember correctly, this idea was already used in Cortex or McCortex indices by Z. Iqbal et al.
September 17, 2025 at 6:32 PM
If I remember correctly, this idea was already used in Cortex or McCortex indices by Z. Iqbal et al.
Ah yeah interesting! I remember I also wanted to try something...and reordering by minimizer content came immediately to mind.
September 12, 2025 at 4:07 PM
Ah yeah interesting! I remember I also wanted to try something...and reordering by minimizer content came immediately to mind.
Yes, I agree. Without consulting online forums -- and now, asking ChatGPT -- it's impossible to remember even how to do a basic thing. CMake generates make files. Can we develop a tool that generates the CMake files that generate the make files?! :D
September 10, 2025 at 6:32 PM
Yes, I agree. Without consulting online forums -- and now, asking ChatGPT -- it's impossible to remember even how to do a basic thing. CMake generates make files. Can we develop a tool that generates the CMake files that generate the make files?! :D