We just published a new Python package for the single-cell analysis of morphological profiles! If you do microscope of cell populations and wish there were better solutions than averaging cell populations, now is the time! Built on the scverse, we bring analysis of imaging data into the […]

I never understood why so many men associate with imagery of predatory animals.

My idealized version of my own masculinity is best represented by a tree. Patient. Immensely endurant. Self-sufficient. Unbothered by trivial, ephemereal affairs. Innately kind to the world around it.

I don't want […]

Finally want to embark on moving to #selfhosted services. Any recommendations for blogs written by humans instead of AI slop? Pointers to software and hosting solutions also appreciated!

Ideally I'd move email and cloud backups such a photos over. Been thinking of setting up #nextcloud […]

@eliocamp seeing as your profile suggests you are used to R, you might like plotnine which gives ggplot2-like syntax. What's really missing is all the extensions to ggplot2, but of course it's impossible to port them all.

How do you balance priorities during job hunts? Specifically tradeoffs in personal growth, work conditions, and ethical considerations?

Looking for any experiences and dillemas you may have faced and how you tackled them.

#JobHunt #discussionwelcome

If you're like me and use the scverse (scanpy, anndata and the like) a lot and need to pseudo-bulk every once in a while, you may have missed that scanpy now ships with built-in functionality for that: https://scanpy.readthedocs.io/en/stable/generated/scanpy.get.aggregate.html
Very useful!