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jgi.doe.gov
Joint Genome Institute
@jgi.doe.gov
4.1K followers 98 following 200 posts
We are a DOE User Facility providing access to integrative genome science capabilities. Located at Berkeley Lab. Work with us: http://jointgeno.me/proposals_B
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jgi.doe.gov
DEADLINE FEB. 3: Don't miss Kristala Prather of @mit.edu keynote speaker at this year's Integrating Experimentation with Data Annual Meeting, during our session on Integrating Data and Modeling for Systemic Insights.

More info: http://usermeeting.jgi.doe.gov

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Promotional graphic for the 2026 EMSL-JGI User Meeting, titled "Empowering Automated Laboratories: Integrating Experimentation with Data." Seattle, Washington, from March 3-5, 2026, featuring keynote speaker Kristala Prather. The graphic includes a QR code and registration link: bit.ly/EMSL-JGIusermeeting2026.
January 12, 2026 at 8:50 PM
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Sign up for our newsletter to receive messages about upcoming proposal deadlines, as well as other ways to connect with the JGI and our resources
jointgeno.me/newsletter
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decorative image reads Sign Up with the JGI and JGI helix logo
January 6, 2026 at 8:53 PM
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With 550 samples collected from an Arctic multi-year ice refuge to sequence microbial communities across glaciers, rivers, fjords and sea ice; Sheree Yao of @obs-banyuls.fr will establish baseline data for predictive ecosystem function models. 🖥️🧬🦠

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Sheree Yau, Centre National de la Recherche Scientifique (France), Connectivity of Arctic microbiomes: from glaciers to fjords
January 6, 2026 at 8:53 PM
jgi.doe.gov
By comparing heat-tolerant & heat-sensitive dinoflagellate algae, Tingting Xiang of UC-Riverside will ID genetic switches controlling photosynthesis under thermal stress, providing insights to improve bioenergy crop resilience. 🖥️🧬

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Tingting Xiang, University of California, Riverside, Unraveling the genomic and regulatory basis of photosynthetic and metabolic adaptation in Symbiodiniaceae dinoflagellates
January 6, 2026 at 8:53 PM
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In using RNA barcoding to track how plasmids and viruses spread genes between bacteria, Lauren Stadler of Rice Univ. hopes to enable precise microbiome engineering for bioenergy & waste treatment applications. 🖥️🧬🦠🧪

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Lauren Stadler, Rice University, Elucidating determinants of mobile genetic element host range in microbial communities
January 6, 2026 at 8:53 PM
jgi.doe.gov
By sequencing 77 fungi species, lotuslofgren.bsky.social of UC Berkeley seeks to understand how they transfer nutrients to pine & fir trees, to improve forest productivity for timber & bioenergy 🖥️🧬
mykophile.bsky.social jruytinx.bsky.social natureatcal.bsky.social

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Lotus A. Lofgren, Duke University, A genus-wide genomic and transcriptomic catalog for ectomycorrhizal nitrogen metabolism
January 6, 2026 at 8:53 PM
jgi.doe.gov
By testing 200 algae genes, mjonikas.bsky.social of Princeton Univ. will ID which enable pyrenoid formation for CO2 concentration. Engineering these into crops could increase yields by 60%, with improved efficiency. 🖥️🧬

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January 6, 2026 at 8:53 PM
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Fumito Maruyama of Hiroshima Univ. will investigate ultrasmall parasitic bacteria in groundwater communities. Using genomics & isotope tracing, he aims to understand their influence on biogeochemical processes in subsurface environments. @MFukushi_ 🖥️🧬🦠🧪

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Fumito Maruyama, Hiroshima University, Uncovering the roles of uncultivated Patescibacteriota in groundwater biogeochemical cycling through the analysis of symbiotic interactions
January 6, 2026 at 8:53 PM
jgi.doe.gov
@zacfreedman.bsky.social of Univ. of Wisc.-Madison will study how soil viruses kill microbes in temperate forests at Wisconsin's Blackhawk Island, forming persistent organic matter through microscopic predator-prey dynamics. @karthik-a.bsky.social

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Zac Freedman, University of Wisconsin, Madison, How do viral-microbial interactions shape soil C biogeochemistry in northern temperate forests?
January 6, 2026 at 8:53 PM
jgi.doe.gov
Sequencing microbes from 81 sites, Hugh Cross of the Nat'l Ecological Observatory Network will generate 100+ Tb of data to integrate w/its 30YR monitoring network. This open-access dataset will incorporate microbial functions into predictive ecosystem models. 🖥️🧬🦠

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Hugh Cross, National Ecological Observatory Network, Continental-scale metagenomics: leveraging the NSF National Ecological Observatory Network to advance understanding of soil and freshwater microbial dynamics
January 6, 2026 at 8:53 PM
jgi.doe.gov
By sequencing microbes from the Great Lakes to examine predatory bacteria and cell-to-cell interactions, Maureen Coleman of Univ. of Chicago seeks novel pathways for degrading complex materials with applications for waste processing and biofuel production. 🖥️🧬🦠🧪

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Hugh Cross, National Ecological Observatory Network, Continental-scale metagenomics: leveraging the NSF National Ecological Observatory Network to advance understanding of soil and freshwater microbial dynamics
January 6, 2026 at 8:53 PM
jgi.doe.gov
Jay Chen of Oak Ridge Nat'l Lab will sequence 500 Eastern cottonwood trees to ID genes for biomass production and stress resistance. This species is the only viable bioenergy feedstock for the Southeast, enabling expansion of domestic biofuel production. 🖥️🧬🌱

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Jay Chen, Oak Ridge National Laboratory, Whole genome sequencing of Populus deltoides natural variants to enable genomic prediction and genome-wide associated studies
January 6, 2026 at 8:53 PM
jgi.doe.gov
Hao Chen of Auburn University will study 29 CRISPR-edited poplars with modified lignin to understand effects on drought tolerance, aiming to develop bioenergy crops that are both resilient and easier to convert into biofuels. 🖥️🧬🌱

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Hao Chen, Auburn University, Linking lignin engineering to drought stress resilience: RNA-Seq and metabolomic insights in lignin biosynthetic pathway edited Populus
January 6, 2026 at 8:53 PM
jgi.doe.gov
By analyzing leaf surface chemicals from 300 genetically distinct poplar trees to identify genes that recruit beneficial microbes, @posybusby of @OSUAgSci aims to develop bioenergy crops with enhanced resilience and yields while reducing chemical inputs. 🖥️🧬🦠

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Posy Busby, Oregon State University, Leaf surface metabolomics in Populus trichocarpa
January 6, 2026 at 8:53 PM
jgi.doe.gov
Asdrubal Burgos of Univ. of Guadalajara will sequence prickly pear cactus genomes to understand how it grows rapidly on marginal lands during drought, producing up to 1,000 tons of biomass per hectare for biofuel without competing with food crops. 🖥️🧬🌱

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A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Asdrubal Burgos, University of Guadalajara (Mexico), Whole genome sequencing of the cactus crop Opuntia ficus-indica and its wild relative Opuntia karwinskiana to unravel the mechanisms that balance productivity and resilience
January 6, 2026 at 8:53 PM
jgi.doe.gov
sbranco.bsky.social of cudenverclas.bsky.social will sequence 150 fungi to identify drought tolerance genes using AI and spatial ecology tools. 🖥️🧬🍄

More: jgi.doe.gov/user-science...
A banner at the top reads Congratulations to our CSP Large Scale Call recipients and includes the JGI helix logo. Below is a headshot and Sara Branco, University of Colorado, Denver, The genetic basis of tolerance to drought across the fungal tree of life
January 6, 2026 at 8:53 PM
jgi.doe.gov
In honor of the IMG/M data portal's 20th anniversary, we want to hear how you use it in your work and what type of science it has enabled you to do.

You can share how IMG has helped your science using this form: https://jointgeno.me/IMGStoriesForm

@berkeleylab.lbl.gov @axelvisel.bsky.social 🖥️🧬 🦠
January 5, 2026 at 7:46 PM
jgi.doe.gov
We're building a data lakehouse (data lake + data warehouse) to improve access to data — and want to hear about your experiences with our systems: https://jointgeno.me/PortalStoriesForm

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@berkeleylab.lbl.gov @danudwary.secondarymetabolism.com @axelvisel.bsky.social @biosci.lbl.gov
December 29, 2025 at 9:12 PM
jgi.doe.gov
In honor of the IMG/M data portal's 20th anniversary, we want to hear how you use it in your work and what type of science it has enabled you to do.

You can share how IMG has helped your science using this form: https://jointgeno.me/IMGStoriesForm

@berkeleylab.lbl.gov @axelvisel.bsky.social 🖥️🧬 🦠
December 26, 2025 at 7:46 PM
jgi.doe.gov
Don't miss Paul Jensen of @umich.edu at this year's Integrating Experimentation with Data Annual Meeting, during our session on AI in Action: Automating Experiments for Genomic Exploration.

More info: http://usermeeting.jgi.doe.gov
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Promotional poster for EMSL and JGI event titled "Empowering Automated Laboratories: Integrating Experiment with Data." Features speaker Paul Jensen with portrait, Seattle Washington from March 3-5, and a Seattle cityscape. Includes QR code and registration link.
December 23, 2025 at 6:13 PM
jgi.doe.gov
Don't miss @kcwrighton.bsky.social of Colorado State University at this year's Integrating Experimentation with Data Annual Meeting, during our session on Decoding the Structure-Function Secrets of Environmental Microbiomes.
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More info: usermeeting.jgi.doe.gov
Promotional poster for the EMSL & JGI User Meeting on 'Empowering Automated Laboratories: Integrating Experiment with Data', featuring speaker Kelly Wrighton. The event is scheduled for March 3-5 in Seattle, Washington. Contains a QR code for registration and an image of Seattle's skyline.
December 17, 2025 at 8:09 PM
jgi.doe.gov
We're building a data lakehouse (data lake + data warehouse) to improve access to data — and want to hear about your experiences with our systems: https://jointgeno.me/PortalStoriesForm

🖥️ 🧬 🌱 🦠 🧪 🍄‍🟫 🍄
@berkeleylab.lbl.gov @danudwary.secondarymetabolism.com @axelvisel.bsky.social @biosci.lbl.gov
December 16, 2025 at 8:05 PM
jgi.doe.gov
Don't miss Hector Garcia Martin of @berkeleylab.lbl.gov at this year's Integrating Experimentation with Data Annual Meeting, during our session on Integrating Data and Modeling for Systemic Insights.
🖥️ 🧬 🌱 🦠 🧪 🍄 🍄‍🟫

More info: http://usermeeting.jgi.doe.gov
Promotional graphic for the 2026 EMSL-JGI User Meeting, titled "Empowering Automated Laboratories: Integrating Experimentation with Data." Seattle, Washington, from March 3-5, 2026, featuring Hector Garcia Martin. The graphic includes a QR code and registration link: bit.ly/EMSL-JGIusermeeting2026.
December 11, 2025 at 7:52 PM
jgi.doe.gov
Don't miss Kristala Prather of @mit.edu keynote speaker at this year's Integrating Experimentation with Data Annual Meeting, during our session on Integrating Data and Modeling for Systemic Insights.

More info: http://usermeeting.jgi.doe.gov

🖥️ 🧬 🌱 🦠 🧪 🍄 🍄‍🟫
Promotional graphic for the 2026 EMSL-JGI User Meeting, titled "Empowering Automated Laboratories: Integrating Experimentation with Data." Seattle, Washington, from March 3-5, 2026, featuring keynote speaker Kristala Prather. The graphic includes a QR code and registration link: bit.ly/EMSL-JGIusermeeting2026.
December 9, 2025 at 5:50 PM
jgi.doe.gov
Don't miss @carrieaeckert.bsky.social of Oak Ridge Nat'l Lab at this year's Integrating Experimentation with Data Annual Meeting, during our session on Genomic Ingenuity: Crafting the Future of BioDesign.

More info: usermeeting.jgi.doe.gov
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Promotional graphic for "Empowering Automated Laboratories: Integrating Experiment with Data", featuring speaker Carrie Eckert. Includes a background image of a city skyline, molecular structures, and a QR code with a link to register. Event dates are March 3-5, hosted by EMSL and JGI in Seattle.
December 5, 2025 at 5:09 PM