John Novembre
@jnovembre.bsky.social
2.9K followers 290 following 9 posts
Population geneticist, University of Chicago
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Reposted by John Novembre
yun-s-song.bsky.social
The 2026 Probabilistic Modeling in Genomics (ProbGen) meeting will be held at UC Berkeley, March 25-28, 2026. We have an amazing list of keynote speakers and session chairs:
probgen2026.github.io

Please help spread the news.
Home - ProbGen 2026
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probgen2026.github.io
jnovembre.bsky.social
This was a large collaborative piece of work with the lead efforts by student @maggiesteiner.bsky.social and former postdoc Dan Rice. It's well-timed for Maggie especially as she is defending her thesis on Monday!
jnovembre.bsky.social
Excited for our publication on how the geographic scale of a sample affects the discovery of rare, deleterious variants to be out this week. With a mix of theory, simulation, and data analysis, we show when samples are narrow vs broad, the number of variants discovered and their frequencies change
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
www.pnas.org
jnovembre.bsky.social
One reason I love what come out of this project is that Dan Rice and @maggiesteiner.bsky.social got in the trenches and developed theory for a model with mutation, selection, drift, geographic dispersal, -and- uneven geographic sampling, which is remarkable simply from a modeling perspective.
jnovembre.bsky.social
Check it out - PhD student @maggiesteiner.bsky.social's nice thread and link to our new preprint on how sample design, in terms of how geographically narrow vs broad a sample is, impacts the discovery/SFS of deleterious variants.
maggiesteiner.bsky.social
Excited to share a new preprint with @jnovembre.bsky.social ! We use a combination of population genetic theory, simulation, and data analysis to ask: how does study design in genetic studies (including biobanks) impact the discovery of rare, deleterious variants?
biorxiv-genetic.bsky.social
Study design and the sampling of deleterious rare variants in biobank-scale datasets https://www.biorxiv.org/content/10.1101/2024.12.02.626424v1
jnovembre.bsky.social
#ASHG24 - Check out our new methods to reveal population structure through time -- poster 3026F presented today by Ahmed Selim from the lab!
jnovembre.bsky.social
#ASHG24 make your way to today’s Novembre lab posters 3015 (label free reference matching, @LukeAnderTroc) 3016 (rare variant discovery, @maggiecsteiner ) and 4041 (impacts of multigeneration shared environments, @mkiravn) to see some great science!
jnovembre.bsky.social
Come join us! UChicago Human Genetics has an open broad computational faculty search (with an emphasis on probabilistic machine learning). First round of application review will begin ~October 15th. apply.interfolio.com/149891 EOE/Vet/Disability.
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jnovembre.bsky.social
Thanks for sharing Dan and my condolences.