Joao Pedro Magalhaes
@jpsenescence.bsky.social
230 followers 51 following 28 posts
Scientist decoding the aging genome, professor, geek, entrepreneur, speaker, writer, keen footballer.
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Reposted by Joao Pedro Magalhaes
agingbiology.bsky.social
Aging-TCA: a cross-species single-cell transcriptomic atlas for studying testicular aging
link.springer.com/article/10.1...
Aging-TCA: a cross-species single-cell transcriptomic atlas for studying testicular aging - BMC Genomics
The testis, with the highest number of transcriptionally active genes among human tissues, offers a unique window into how aging affects complex gene regulation. Recent advancements in single-cell RNA sequencing have enabled multi-species studies of aging-related transcriptome changes in testes. However, a comprehensive aging-related cross-species platform for analyzing testicular single-cell transcriptomes remains absent. To address this gap, we developed Aging-TCA (Aging-related Testicular Cell Atlas, available at http://tca.xielab.tech/)— a comprehensive online platform containing aging-related testicular single cell and spatial transcriptome profiles from human, cynomolgus monkey, mouse, and zebrafish across 89 samples and over 460, 000 testicular cells, nuclei or spots. Aging-TCA provides versatile tools for temporal and spatial analyzing testicular aging, including aging-related testicular gene expression visualization, cell-cell communication comparisons, cell-trajectory analysis, gene regulatory network analysis, testicular cell type auto-identification, time-series analysis, and spatial transcriptome comparisons. In summary, we provide a novel platform Aging-TCA for advancing cross-species research into testicular aging, facilitating future investigations in this field.
link.springer.com
jpsenescence.bsky.social
Dark Prague was the perfect place to talk about longevity and fighting aging.

Aging isn’t natural. It’s legacy code. A software design flaw. And we’re learning how to rewrite it.
jpsenescence.bsky.social
On this Longevity Day, I questioned the field’s focus on healthspan, argued we need to be more creative and ambitious, and suggested that aging is driven not by molecular damage but by genetic programs.

Had fun at TransVision 2025 in Madrid, though I may not have made many friends 😀
jpsenescence.bsky.social
It was brilliant to attend the Longevity Investors conference in stunning Gstaad 🇨🇭

Everyone is aging, and age-related diseases are the major causes of mortality worldwide, yet investment in aging and longevity tech is still small. How can we increase it?
Reposted by Joao Pedro Magalhaes
agingbiology.bsky.social
Personalized transcriptional network analysis links age-related loss of gene coordination to individual biological aging
link.springer.com/article/10.1...
Personalized transcriptional network analysis links age-related loss of gene coordination to individual biological aging - Genome Medicine
Background Aging is characterized by the decline in biological functions, accompanied by changes in gene-to-gene transcriptional coordination, which can be estimated by expression coordination in gene transcriptional network. Notably, gene networks and coordinated expression relationships (CERs) showed inter-individual variability, while personalized aging-related gene expression coordination dynamics in human cohorts have yet to be investigated. Methods In this study, we constructed 15,933 personalized transcriptional networks across 26 tissues from 967 donors aged 20 to 80 years old, using the sample-specific network (SSN) framework based on data from the Gene-Tissue Expression (GTEx) project. Results We identified gene–gene CERs and characterized their age-dependent dynamic trends across tissues, observing a universal trend of increased gene-to-gene coordination loss during aging across tissues. The count of lost CERs is also positively correlated with individual-level aging and senescence-related molecular phenotypes. Notably, we revealed that the lost CERs have potential as biomarkers for individual aging and health status. In addition, we identified gene coordination loss events exhibiting significant positive correlation with age, defined as aging-related lost relationships (ARLRs), which may be functionally associated with pathways related to proteolytic processes. Finally, we showed that ARLRs may contribute to deleterious effects and increased pathogenicity through gene dosage imbalances. Conclusions This study establishes, for the first time, a connection between the loss of gene-to-gene expression coordination and individual-level aging progress. It provides proof-of-principle evidence for using lost gene coordinated expression relationships as biomarkers of healthy aging and highlights the potential risks associated with coordination loss in specific biological pathways during aging.
link.springer.com
Reposted by Joao Pedro Magalhaes
jpsenescence.bsky.social
A terrific @gimmfoundation.bsky.social Festival in Lisbon.

It was great to debate how to build a unifying theory of aging.
jpsenescence.bsky.social
I'm very much looking forward to participating in the NEXii Longevity Congress 2025 in my hometown of Porto.

NEXii 2025 will focus on the future of the longevity economy. Join me in Porto, Portugal, on 8-9 October 2025.

nexiilongevity.com