Malte Kuehl
maltekuehl.com
Malte Kuehl
@maltekuehl.com
Computational medicine @ AU
Founder @ KH Biotechnology
Creator of spatiomic, pytximport and https://biocontext.ai
Interested in spatial omics, cancer & ageing
Lab: https://github.com/complextissue/
Personal: https://maltekuehl.com
Opinions my own.
If Google truly wants to increase its API market share, trust needs to be earned.
December 23, 2025 at 1:36 PM
Learn more about biomedical agentic AI at biocontext.ai and join our community to help build out the ecosystem for AI-accelerated science
BioContextAI - Biomedical Model Context Protocol for Agentic AI
Connect agentic AI with biomedical resources using the Model Context Protocol. Discover and contribute FAIR biomedical MCP servers.
biocontext.ai
October 26, 2025 at 8:13 PM
You can organize a ton of your existing code in a few subfolders, add some “SKILL.md” files and make it available to any MCP client that can also execute code.

The ease of skills combined with the support and standardization of MCP - with skill-to-mcp now a reality 🎉
October 26, 2025 at 8:13 PM
Simply put your skills in a folder, add “uvx skill-to-mcp -s /your/skill_folder” to your MCP configuration and your agent will be able to discover skills and all related files.

This pattern is powerful!
October 26, 2025 at 8:13 PM
If you are working with imaging-based proteomics, make sure to check out spatiomic.org, too, which includes many utility functions to apply lattice-based spatial statistics to your data.
September 11, 2025 at 9:11 AM
Reposted by Malte Kuehl
💫 The 2025 SIB Innovative Resource Award goes to @scverse.bsky.social 💫
The jury is impressed by the focus of these omics tools on interoperability, usability, and communication. The project’s solid governance and emphasis on open science principles are particularly commendable
#SIBawards #bc2basel
September 9, 2025 at 9:45 AM