computational biology, ML, protein design, cheminformatics, fancy dev tooling, tinge of bouldering
https://marinegor.dev
hope to see it in a better state one day
3/3
hope to see it in a better state one day
3/3
2/3
2/3
Yes, it internally operates on chunked arrays, and I believe there's also an option to control their size somehow, although I've never done it myself.
Yes, it internally operates on chunked arrays, and I believe there's also an option to control their size somehow, although I've never done it myself.
thanks, noted! I'm figuring out how to do that for other usecase (currently on pickling, see issue: github.com/birkenfeld/s...), but later it's directly convertible to sassy.
thanks, noted! I'm figuring out how to do that for other usecase (currently on pickling, see issue: github.com/birkenfeld/s...), but later it's directly convertible to sassy.
yes, polars has its own global allocator which is based on rayon, so it manages all reading and compute together.
You can have a look at e.g. polars-distance for an inspiration: github.com/ion-elgreco/...
yes, polars has its own global allocator which is based on rayon, so it manages all reading and compute together.
You can have a look at e.g. polars-distance for an inspiration: github.com/ion-elgreco/...
yep, exactly -- to not cross python/rust border twice.
>You're thinking of a plugin that filters the rows (records) of a table?
something like that, yes: gist.github.com/marinegor/a5...
(note `Lazy`)
yep, exactly -- to not cross python/rust border twice.
>You're thinking of a plugin that filters the rows (records) of a table?
something like that, yes: gist.github.com/marinegor/a5...
(note `Lazy`)
I wonder if you've ever considered building a polars plugin for that as well? We've been using it a bunch for the sequence data consumption for ML purposes, and I wonder if it's something you have on your roadmap.
I wonder if you've ever considered building a polars plugin for that as well? We've been using it a bunch for the sequence data consumption for ML purposes, and I wonder if it's something you have on your roadmap.
sadly neither `maybe` nor `result` are not maintained anymore💔
sadly neither `maybe` nor `result` are not maintained anymore💔
ah, and caps is language switching for me, also insanely useful.
ah, and caps is language switching for me, also insanely useful.
I imagine you started working on it before MDAnalysis introduced parallelization, so I wonder if you'd be interested in implementing it for eRMSF as described here: docs.mdanalysis.org/stable/docum...
I imagine you started working on it before MDAnalysis introduced parallelization, so I wonder if you'd be interested in implementing it for eRMSF as described here: docs.mdanalysis.org/stable/docum...
Feels unexpectedly good, I should say.
Feels unexpectedly good, I should say.