Emilio Mármol Sánchez
@marmole6.bsky.social
430 followers 730 following 14 posts
Veterinarian & Researcher working on RNA, DNA and 3D genomics in ancient organisms at Globe Institute UCPH
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marmole6.bsky.social
Are you interested in microRNAs 🧬 and goats 🐐? We are!!

Then have a look at our preprint on how microRNA mutations segregate worldwide 🌍 in goat populations and the potentially derived consequences of prolonged inbreeding and geographical isolation.

www.biorxiv.org/content/10.1...
The variability of goat microRNA genes is strongly shaped by functional constraints
Background MicroRNAs (miRNAs) are a type of small non-coding RNAs involved in the post-transcriptional repression of target mRNA transcripts, and responsible for the fine-tuning of numerous molecular ...
www.biorxiv.org
Reposted by Emilio Mármol Sánchez
cpgsthlm.bsky.social
The world's oldest bacterial DNA found in a million-year-old mammoth!

New results from researchers at #CpgSthlm published in Cell!

Paper:
www.cell.com/cell/abstrac...
marmole6.bsky.social
Have a look at our new 2025 Blog entry from @aarc-community.bsky.social where we interviewed Dr. Pascale Lubbe (@plubbe.bsky.social) about the research project she presented in July 2025 #AaRCTikTalks

www.animal-adna.org/blog/2025/08...
Interview to our July AaRCTikTalks speaker Pascale Lubbe · AaRC
www.animal-adna.org
Reposted by Emilio Mármol Sánchez
oskolkov.bsky.social
I am starting a computational lab at LIOS, Riga, Latvia, and going to recruit a few people. Please DM if you are interested in a postdoc or PhD position in my Metabolic Research Group within the TARGETWISE project. I can highly recommend Riga, it is a beautiful city with very good living conditions.
marmole6.bsky.social
Have a look at our new 2025 Blog entry from
@aarc-community.bsky.social where we interviewed PhD Fellow Lydia Hildebrand Furness about the research project she presented in March 2025 #AaRCTikTalks

animal-adna.org/blog/2025/05...

#aDNA #Dugong #conservation
Interview to our March AaRCTikTalks speaker Lydia Hildebrand Furness · AaRC
animal-adna.org
marmole6.bsky.social
Have a look at our new 2025 Blog entry from
@AaRC_Community where we interviewed Dr. Alexander Salis and Dr. Anna Penna (@apenna.bsky.social‬) about the research project he presented in February 2025 #AaRCTikTalks.

animal-adna.org/blog/2025/05...
animal-adna.org/blog/2025/05...

#aDNA #museomics
Interview to our February AaRCTikTalks speaker Alexander Salis · AaRC
animal-adna.org
marmole6.bsky.social
Have a look at our second 2025 Blog entry from @aarc-community.bsky.social where we interviewed Jesse Morin about the research project he presented in January 2025 #AaRCTikTalks.

www.animal-adna.org/blog/2025/03...

#ancientDNA #aDNA #salmon #Tsleil_Waututh
Interview to our January AaRCTikTalks speaker Jesse Morin · AaRC
www.animal-adna.org
Reposted by Emilio Mármol Sánchez
aarc-community.bsky.social
Next week we will got back to our schedule of #AaRCTikTalks, and this year starts strong with a talk about the population genomics of the extinct Darwin ground sloths of Chile and another about the salmon fisheries of the Coast Salish #aDNA 🧪🏺🧬
AaRC Talks, Friday 31st January 4pm GMT, 5pm CET, 11am EST
marmole6.bsky.social
Have a look at our first 2025 Blog entry from @aarc-community.bsky.social where we interviewed @maridehasque.bsky.social and Ophélie Lebrasseur about the research projects they presented in the November 2024 #AaRCTikTalks.

animal-adna.org/blog/2025/01...

#ancientDNA #aDNA #mammoth #chicken
Interview to our November AaRCTikTalks speakers Marianne Dehasque and Ophelie Lebrasseur · AaRC
animal-adna.org
marmole6.bsky.social
We have not shared a preprint so far, apologies.

It should come out at some point during 2025, hopefully!!
marmole6.bsky.social
We have used KrakenUniq to do a classification of "what is there" but not used it to prefilter anything, just on reads >30nt. Our average length was rather short (~25nt cuz we were working on ancient RNA).

Would you recommend going to smaller kmer databases and prefilter? Kraken2 vs KrakenUniq?
marmole6.bsky.social
We have a paper under review on ancient RNA where we used UMAP to cluster tissue-specific gene expression patterns as commonly seen for scRNA-seq and RNA-seq.

Interestingly, classical approaches such as PCA were good to distinguish old from modern stuff, but not much so to capture tissue identity.
Reposted by Emilio Mármol Sánchez
lpachter.bsky.social
I've posted the notes/slides for my computational biology class at github.com/pachterlab/B... Topics were chosen based on appearing in >=3 bio areas, although for focus examples are all drawn from #scRNAseq. Homeworks include both theory and exploration of data (via GoogleColab).
Reposted by Emilio Mármol Sánchez
drnwillburger.bsky.social
35,000-year-old frozen saber-toothed cat mummy studied for first time ever
The cat's remains were found in Yakutia, Russia, and were determined to be those of a 3-week-old cub.

www.nbcnews.com/science/scie...
Reposted by Emilio Mármol Sánchez
zchiang.bsky.social
7 years ago, I met a junior fellow named Jason Buenrostro who blew me away with a vision of futuristic genomic technologies

Today, we (Ajay Labade, Caroline Comenho) are excited to share our first steps into that future: Expansion in situ genome sequencing

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Reposted by Emilio Mármol Sánchez
lovedalen.bsky.social
🧬🐭🐴🐻Job Alert🐻🐴🐭🧬

We are hiring 3 postdoctoral researchers in DeepTime Palaeogenomics!

All positions are for 2 years (extension possible), & are fully funded both in terms of employment and project costs.

Deadline: 2 Dec 2024

Please RT!

Apply:
www.su.se/english/abou...